Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K05
(403 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00850.1 68417.m00116 SSXT family protein low similarity to s... 65 1e-11
At1g01160.1 68414.m00026 SSXT protein-related / transcription co... 61 2e-10
At5g28640.1 68418.m03503 SSXT protein-related / glycine-rich pro... 49 1e-06
At2g17760.1 68415.m02057 aspartyl protease family protein contai... 29 1.2
At2g28350.1 68415.m03445 auxin-responsive factor (ARF10) similar... 29 1.5
At1g22275.1 68414.m02784 expressed protein 29 1.5
At5g17980.1 68418.m02109 C2 domain-containing protein contains I... 28 2.7
At5g44635.1 68418.m05469 minichromosome maintenance family prote... 27 3.5
At5g01970.1 68418.m00116 expressed protein 27 3.5
At5g20480.1 68418.m02434 leucine-rich repeat transmembrane prote... 27 4.7
At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator iden... 27 4.7
At2g02710.1 68415.m00211 PAC motif-containing protein similar to... 27 6.2
At5g15130.1 68418.m01773 WRKY family transcription factor contai... 26 8.2
At4g14990.1 68417.m02303 expressed protein 26 8.2
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 26 8.2
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 26 8.2
At1g30050.1 68414.m03674 hypothetical protein 26 8.2
At1g30000.1 68414.m03669 glycoside hydrolase family 47 protein s... 26 8.2
>At4g00850.1 68417.m00116 SSXT family protein low similarity to
synovial sarcoma associated SS18-delta [Mus musculus]
GI:17978535; contains Pfam profile PF05030: SSXT protein
(N-terminal region)
Length = 223
Score = 65.3 bits (152), Expect = 1e-11
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +2
Query: 113 LSPAQIQKMLDENVHLIQTIQEYQAKGQLLECHQYQQVLHRNLVYLASVADAXXXXXXXX 292
++ QIQK LDEN LI I E Q G+L EC QYQ +L +NL+YLA++ADA
Sbjct: 21 ITTEQIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQKNLMYLAAIADAQPQPPAAT 80
Query: 293 XXXXXXAPGNVSQAPSS-NPPSS 358
P ++ PSS PP S
Sbjct: 81 LTSGAMTPQAMAPNPSSMQPPPS 103
>At1g01160.1 68414.m00026 SSXT protein-related / transcription
co-activator-related similar to SYT/SSX4 fusion protein
(GI:11127695) [Homo sapiens]; supporting cDNA
gi|21539891|gb|AY102640.1|; contains Pfam profile
PF05030: SSXT protein (N-terminal region)
Length = 195
Score = 61.3 bits (142), Expect = 2e-10
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = +2
Query: 113 LSPAQIQKMLDENVHLIQTIQEYQAKGQLLECHQYQQVLHRNLVYLASVADA 268
++ QIQK LDEN LI I E Q G+L EC QYQ +L +NL+YLA++ADA
Sbjct: 22 ITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADA 73
>At5g28640.1 68418.m03503 SSXT protein-related / glycine-rich
protein contains weak hit to Pfam profile PF05030: SSXT
protein (N-terminal region)
Length = 210
Score = 49.2 bits (112), Expect = 1e-06
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +2
Query: 128 IQKMLDENVHLIQTIQEYQAKGQLLECHQYQQVLHRNLVYLASVADA 268
IQ+ LDEN LI I E Q G+L EC + Q L RNL+YLA++AD+
Sbjct: 25 IQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADS 71
>At2g17760.1 68415.m02057 aspartyl protease family protein contains
Eukaryotic and viral aspartyl proteases active site,
PROSITE:PS00141
Length = 513
Score = 29.1 bits (62), Expect = 1.2
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +1
Query: 49 FCRKKYIYNVRSICCSRQSTS--TKPSSNTENVRRE--CSFDTNNTRIPSERTTFGMSSI 216
F R+K I + C TS T PS+ + + R SFD T IPS+R +S
Sbjct: 435 FDREKLILGWKESDCYTGETSARTLPSNRSSSSARPPASSFDPEATNIPSQRPNTSTTSA 494
Query: 217 SASFTQKFGVF 249
+ S + +F
Sbjct: 495 AYSLSISLSLF 505
>At2g28350.1 68415.m03445 auxin-responsive factor (ARF10) similar to
auxin response factor 10 GI:6165644 from [Arabidopsis
thaliana]; identical to cDNA auxin response factor 10
(ARF10) mRNA, partial cds GI:6165643
Length = 693
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 254 RLNTPNFCVKLADIDDIPKVVLSLGI--LVLFVSNEHSRLTFSVFELGLVEV 105
R +TP FCVK AD+ ++ G+ + F + + SR+++ + + V+V
Sbjct: 294 RASTPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRISWFMGTVSAVQV 345
>At1g22275.1 68414.m02784 expressed protein
Length = 856
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 109 STKPSSNTENVRRECSFDTNNTRIPSERTT 198
+T P +++ RE +TNN RIP R T
Sbjct: 766 ATNPKHHSKVTHREYEVETNNGRIPKRRKT 795
>At5g17980.1 68418.m02109 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1049
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 59 RNTFIMSVAFAVRGNRPPLSPAQIQKMLDENVH 157
RNT + +A + + PPL P ++ MLD + H
Sbjct: 803 RNTAVKILAAHLSRSEPPLRPEIVRYMLDADTH 835
>At5g44635.1 68418.m05469 minichromosome maintenance family protein
/ MCM family protein similar to SP|P97311 DNA
replication licensing factor MCM6 {Mus musculus};
contains Pfam profile PF00493: MCM2/3/5 family
Length = 831
Score = 27.5 bits (58), Expect = 3.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 82 YGHYKCISCGRIILLTQNQLK 20
YG +KC+ CG +I + Q K
Sbjct: 150 YGTFKCLDCGSVIKNVEQQFK 170
>At5g01970.1 68418.m00116 expressed protein
Length = 351
Score = 27.5 bits (58), Expect = 3.5
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +2
Query: 125 QIQKMLDENVHLIQTIQEYQAKGQLL-ECHQYQQVLHRNLVYLASVADAXXXXXXXXXXX 301
Q++ +L E L Y + + L E +Y Q+ +++VY+ ++
Sbjct: 254 QLESLLAEKARLAHENSVYARENRFLREIVEYHQLTMQDVVYIDEGSEEVTQVSPFVSTL 313
Query: 302 XXXAPGNVSQAPSS 343
+P + SQ+P S
Sbjct: 314 MTSSPADRSQSPPS 327
>At5g20480.1 68418.m02434 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21, Oryza sativa,
PIR:A57676
Length = 1031
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 152 VHLIQTIQEYQAKGQLLECHQYQQVLHRNLVYLASVADA 268
V ++ ++ K + EC ++ + HRNLV L +V +
Sbjct: 740 VKVLNLLKHGATKSFMAECETFKGIRHRNLVKLITVCSS 778
>At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator
identical to SEUSS transcriptional co-regulator
[Arabidopsis thaliana] gi|18033922|gb|AAL57277
Length = 877
Score = 27.1 bits (57), Expect = 4.7
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +2
Query: 317 GNVSQAPSSNPPSSGVDVPGGSQQQYRAP 403
GN Q S P SSG VP SQQQ+ P
Sbjct: 682 GNSVQMQS--PSSSGTMVPSSSQQQHNLP 708
>At2g02710.1 68415.m00211 PAC motif-containing protein similar to
nonphototropic hypocotyl 1 [Zea mays] GI:2687358;
contains Pfam profile PF00785: PAC motif
Length = 399
Score = 26.6 bits (56), Expect = 6.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 171 YKNTKRKDNFWNVINIS 221
Y N K K +FWN+++IS
Sbjct: 329 YSNRKDKSSFWNLLHIS 345
>At5g15130.1 68418.m01773 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain; TMV
response-related gene product, Nicotiana tabacum,
EMBL:AB024510
Length = 548
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 311 APGNVSQAPSSNPPSSGVDVPGGSQQQ 391
APG V+ SS P+SG D G + QQ
Sbjct: 181 APGKVTGKRSSPAPASGGDADGEAGQQ 207
>At4g14990.1 68417.m02303 expressed protein
Length = 787
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 311 APGNVSQAPSSNPPSSGVDVPGGSQQQYRAP 403
+PG SQ S + +PGGSQ + AP
Sbjct: 187 SPGKRSQQSSPSHIHRAPSLPGGSQSNFSAP 217
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 314 PGNVSQAPSSNPPSSGVDVPGGS 382
P + S +PSS+PP D PG S
Sbjct: 132 PDSPSPSPSSSPPLPSSDAPGPS 154
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 314 PGNVSQAPSSNPPSSGVDVPGGS 382
P + S +PSS+PP D PG S
Sbjct: 132 PDSPSPSPSSSPPLPSSDAPGPS 154
>At1g30050.1 68414.m03674 hypothetical protein
Length = 389
Score = 26.2 bits (55), Expect = 8.2
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Frame = +2
Query: 95 RGNRPP----LSPAQIQKMLDENVHLIQTIQEYQAKGQLL-ECHQYQQVLHRNLVYLASV 259
+GN P L Q++ +L E L Y + + L E +Y Q+ +++VY+
Sbjct: 237 KGNNNPADDDLIRLQLETLLAEKARLAHENSIYARENRFLREIVEYHQLTMQDVVYIDEG 296
Query: 260 ADAXXXXXXXXXXXXXXAPGNVSQAPSSNP-PSS 358
+ A + S+ PS +P PSS
Sbjct: 297 IEEVAEVNPSITRTLSMASYSASELPSISPSPSS 330
>At1g30000.1 68414.m03669 glycoside hydrolase family 47 protein
similar to GI:5579331 from [Homo sapiens]; contains Pfam
profile PF01532: Glycosyl hydrolase family 47
Length = 624
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 150 MFI*YKQYKNTKRKDNFWNVINISKFYTEI 239
+F+ Y+ K+TK +D W + + YT++
Sbjct: 531 LFVLYRITKDTKYRDQGWQIFEAFEKYTKV 560
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,552,932
Number of Sequences: 28952
Number of extensions: 163535
Number of successful extensions: 494
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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