Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K04
(463 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce... 100 2e-22
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 29 0.26
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 4.3
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 25 5.6
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple... 25 5.6
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 25 5.6
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 24 9.8
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 24 9.8
>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 99.5 bits (237), Expect = 2e-22
Identities = 49/121 (40%), Positives = 73/121 (60%)
Frame = +1
Query: 100 VKNIGNVLNDPTRPLKERFRALFTLRNLGGETAINCISECFKDESVLLKHELAYCLGQMQ 279
V + + + D PL R+R +F LRN+G E A+ +++ FKD S L +HE+A+ GQM
Sbjct: 178 VAKLRSEIVDQNLPLFYRYRVMFRLRNIGNEEAVLALTDGFKDPSPLFRHEIAFVFGQMI 237
Query: 280 DKRAIPILRGVLEDQNHDPIVRHEAGEALGAIGDPNLREILEKYQYDSAIEVAETCQIAL 459
++P L VLE+ P+VRHEA EALG I + +L+K+ D VAE+C +AL
Sbjct: 238 APASVPALIKVLENTEEVPMVRHEAAEALGGIANDECLPVLKKFSKDDVRVVAESCIVAL 297
Query: 460 E 462
+
Sbjct: 298 D 298
Score = 91.5 bits (217), Expect = 6e-20
Identities = 52/131 (39%), Positives = 78/131 (59%), Gaps = 6/131 (4%)
Frame = +1
Query: 85 VSETVVKNIGNVLN--DPTRPLKERFRALFTLRNL---GGETAINCISECFKDESVLLKH 249
V + V+ + VL D + PL R+RALF+L L G + A++ I + F D+S LLKH
Sbjct: 6 VPQAVIDELERVLVNLDKSNPLSFRYRALFSLNALAKKGDKRAVDAIYKAFIDDSELLKH 65
Query: 250 ELAYCLGQMQDKRAIPILRGVLEDQNHDPIVRHEAGEALGAIGDPNLREILEK-YQYDSA 426
E+AY +GQ + A+ L ++ D + +VRHEA EALGA+G +LEK Y+ D
Sbjct: 66 EMAYVMGQSGQQYAVQPLINIVNDLDQQVMVRHEAAEALGALGFTESLPVLEKYYKEDPL 125
Query: 427 IEVAETCQIAL 459
+ ETC++A+
Sbjct: 126 APIRETCELAI 136
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 29.5 bits (63), Expect = 0.26
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -3
Query: 275 ICPKQYASSCFNSTDSSLKHSLMQFIAVSPPKLRRVNKALKRSFNGLVGSFKTLP 111
I ++ S F+ST L +L + P VN++L R+F+ LVG + P
Sbjct: 572 ILDAKHESETFSSTSRKLIQNLFLLFPLLPGNAIDVNESLARAFDQLVGIVPSEP 626
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 4.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 317 SSTPLRIGIALLSCICPKQYASSCFNSTDSSLKHS 213
+ P +GIA+L+ + +SS +NST SS +S
Sbjct: 152 NGNPSCVGIAVLAVLPQPISSSSTYNSTTSSYHNS 186
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 25.0 bits (52), Expect = 5.6
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Frame = -2
Query: 111 DILYNCFADISH---WNFFYL 58
D+LYN ++D H W F Y+
Sbjct: 440 DVLYNLYSDTQHLMRWGFMYV 460
>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
beta subunit Tfg2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.0 bits (52), Expect = 5.6
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -2
Query: 120 DIADILYNCFADISHW 73
++ DIL+ CF D +W
Sbjct: 195 ELLDILFKCFEDYEYW 210
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.0 bits (52), Expect = 5.6
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 242 NSTDSSLKHSLMQFIAVSPPKLRRVN-KALKRSFNGLVGSFKTLPIFFT 99
N S L+Q V PPKLR V+ AL RS V S+K + IF +
Sbjct: 375 NDGYSQAPEQLLQRYVVVPPKLRLVSLVALLRSH---VRSYKKIIIFLS 420
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 24.2 bits (50), Expect = 9.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 146 FNGLVGSFKTLPIFFTTVSLTLAIGIFFT 60
+NG TL + TVS TL +G+F T
Sbjct: 610 WNGQWSLISTLFVLEVTVSTTLRVGLFRT 638
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 24.2 bits (50), Expect = 9.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 441 FCHLNCRVVLIFF*YFTEIWI 379
F L C + LIF YF E W+
Sbjct: 115 FWCLVCTLALIFLTYFYETWV 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,844,673
Number of Sequences: 5004
Number of extensions: 34884
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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