Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K04
(463 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1187 - 26793455-26793496,26793599-26793717,26793813-267939... 114 4e-26
12_01_0405 - 3207977-3208018,3208097-3208215,3208303-3208429,320... 113 7e-26
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744... 31 0.45
04_03_0644 + 18337757-18337947,18339113-18339344 30 1.0
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 29 1.8
03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583... 29 2.4
01_06_1451 + 37451004-37451113,37451422-37451661,37451765-374518... 28 4.2
01_02_0030 + 10350505-10351227 27 7.3
06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764 27 9.7
03_06_0284 + 32836171-32836377,32836466-32836568,32836681-328367... 27 9.7
03_06_0226 + 32495088-32495237,32496189-32496351,32496438-324965... 27 9.7
03_06_0071 + 31465707-31466237,31467455-31468075,31468438-314685... 27 9.7
03_05_0497 + 24932336-24932485,24934037-24934199,24934306-249344... 27 9.7
02_05_0183 + 26537676-26537752,26538481-26538649,26538736-265389... 27 9.7
>12_02_1187 -
26793455-26793496,26793599-26793717,26793813-26793939,
26794382-26794520,26794565-26794833,26794923-26795056,
26795630-26795750
Length = 316
Score = 114 bits (274), Expect = 4e-26
Identities = 58/114 (50%), Positives = 76/114 (66%), Gaps = 1/114 (0%)
Frame = +1
Query: 121 LNDPTRPLKERFRALFTLRNLGGETAINCISECFKDESVLLKHELAYCLGQMQDKRAIPI 300
L D +P+ ERFRALF+LRNL G+ + + +D S LL HE A+ LGQMQD AIP
Sbjct: 9 LLDAAQPIAERFRALFSLRNLRGDAPRRALLQAARDSSNLLAHEAAFALGQMQDAEAIPA 68
Query: 301 LRGVLEDQNHDPIVRHEAGEALGAIG-DPNLREILEKYQYDSAIEVAETCQIAL 459
L VL+D + PIVRHEA EALGAIG + ++ + E D A+EV ETC++A+
Sbjct: 69 LEAVLKDLSLHPIVRHEAAEALGAIGLEKSISLLEESLAVDPAVEVQETCELAI 122
Score = 93.1 bits (221), Expect = 1e-19
Identities = 46/104 (44%), Positives = 68/104 (65%)
Frame = +1
Query: 148 ERFRALFTLRNLGGETAINCISECFKDESVLLKHELAYCLGQMQDKRAIPILRGVLEDQN 327
ER+ ALF LRN G+ A++ I +S LL+HE+AY LGQ+Q+K A L VL++ +
Sbjct: 187 ERYAALFALRNDSGDAAVSAIVAALGVKSALLRHEVAYVLGQLQNKAASDALSTVLKNVD 246
Query: 328 HDPIVRHEAGEALGAIGDPNLREILEKYQYDSAIEVAETCQIAL 459
P+VRHEA EALG+I D +LE++ D V+++C++AL
Sbjct: 247 EHPMVRHEAAEALGSIADQESIALLEEFAKDPEPIVSQSCEVAL 290
>12_01_0405 -
3207977-3208018,3208097-3208215,3208303-3208429,
3208776-3208914,3209001-3209227,3209389-3209522,
3209659-3209779
Length = 302
Score = 113 bits (272), Expect = 7e-26
Identities = 60/120 (50%), Positives = 80/120 (66%), Gaps = 1/120 (0%)
Frame = +1
Query: 103 KNIGNVLNDPTRPLKERFRALFTLRNLGGETAINCISECFKDESVLLKHELAYCLGQMQD 282
K + ++L D +P+ ERFRALF+LRNL G+ + + +D S LL HE A+ LGQMQD
Sbjct: 3 KFLCDLLLDTAQPIAERFRALFSLRNLHGDGPRCALLQAARDSSNLLAHEAAFALGQMQD 62
Query: 283 KRAIPILRGVLEDQNHDPIVRHEAGEALGAIG-DPNLREILEKYQYDSAIEVAETCQIAL 459
AIP L VL+D + PIVRHEA EALGAIG + ++ + E D A+EV ETC++AL
Sbjct: 63 AEAIPALEAVLKDLSLHPIVRHEAAEALGAIGLEKSIPLLEESLAADPAVEVQETCELAL 122
Score = 93.5 bits (222), Expect = 7e-20
Identities = 48/120 (40%), Positives = 73/120 (60%)
Frame = +1
Query: 100 VKNIGNVLNDPTRPLKERFRALFTLRNLGGETAINCISECFKDESVLLKHELAYCLGQMQ 279
V + +L + + ER+ ALF LRN + A++ I +S LLKHE+AY LGQ+Q
Sbjct: 157 VHQLREILLNEQESMYERYAALFALRNDSRDAAVSAIVAALGAKSALLKHEVAYVLGQLQ 216
Query: 280 DKRAIPILRGVLEDQNHDPIVRHEAGEALGAIGDPNLREILEKYQYDSAIEVAETCQIAL 459
+K A L VL++ + P+VRHEA EALG+I D +LE++ D V+++C++AL
Sbjct: 217 NKAASDALSTVLKNVDEHPMVRHEAAEALGSIADQESIALLEEFAKDPEPIVSQSCEVAL 276
>01_06_0866 -
32572002-32572541,32572806-32572984,32574330-32574430,
32574554-32574887,32574915-32575037,32575193-32575394,
32575915-32576097,32576332-32576436,32576553-32576760,
32577025-32577170,32577321-32577443,32577490-32577698,
32577931-32578152,32578189-32578198,32578710-32578763,
32580841-32581052,32581620-32581772,32582071-32582158,
32582192-32582290,32582660-32582907,32584806-32585049
Length = 1260
Score = 31.1 bits (67), Expect = 0.45
Identities = 18/70 (25%), Positives = 37/70 (52%)
Frame = -3
Query: 443 VSATSIAESY*YFSNISRRFGSPIAPRASPASWRTMGS*F*SSSTPLRIGIALLSCICPK 264
V++ + ++Y + ++ GS AP+A+PA W M + F + R+GI ++ I
Sbjct: 432 VASADVMKNY-FIGSVLSGGGSVPAPQATPAVWVNMVNEFQKGALSTRLGIPMIYGIDAV 490
Query: 263 QYASSCFNST 234
++ +N+T
Sbjct: 491 HGNNNVYNAT 500
>04_03_0644 + 18337757-18337947,18339113-18339344
Length = 140
Score = 29.9 bits (64), Expect = 1.0
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 262 CLGQMQDKRAIPILRGVLEDQNHDPIVRHEAGEALGAIGDPNLREILEKYQYDSAIEVAE 441
CL D L L + +DP + ++ GE LG I N + IL ++ +E A+
Sbjct: 61 CLDSSSDVEEEYSLVAKLLGETNDPEMENDDGEILGVIDTTNYKTILVQHVLSIQVEHAQ 120
Query: 442 TCQ 450
Q
Sbjct: 121 ELQ 123
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -3
Query: 395 SRRFGSPIAPRASPASWRTMGS*F*SSSTPLRIGIALLSCICPKQYA 255
S R +P +P ++P+S + S SSSTP+R +A S P++ A
Sbjct: 100 SSRISAPTSPSSAPSSPSSSSS---SSSTPVRDAVAAESQSAPRRLA 143
>03_02_1035 -
13557425-13557721,13557855-13558058,13558143-13558332,
13558450-13558841,13558931-13559023,13559297-13559500,
13559572-13559635,13559760-13559806,13559825-13559971,
13560243-13560335,13560420-13560599,13560993-13561128,
13561216-13561466,13561556-13561669,13561794-13561991,
13562050-13562110,13562921-13563210
Length = 986
Score = 28.7 bits (61), Expect = 2.4
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +1
Query: 208 ISECFKDESVLLKHELAYCLGQMQDKRAIPIL-RGVLED-----QNHDPIVRHEAGEALG 369
+ C KD+ ++ A C+ ++ D A + RG LE +++P+V A AL
Sbjct: 216 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLEALKDLISDNNPMVVANAVAALA 275
Query: 370 AIGDPNLREILE 405
I D + R I E
Sbjct: 276 EIQDSSTRPIFE 287
>01_06_1451 +
37451004-37451113,37451422-37451661,37451765-37451846,
37452159-37452200,37452285-37452344,37453020-37454663,
37454763-37454864,37455846-37455986,37456077-37456202,
37456376-37456543
Length = 904
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 208 ISECFKDESVLLKHELAYCLGQMQDKRAIPIL-RGVLE 318
+ EC +++ VLL+ + +C G +Q IP+L RGV++
Sbjct: 136 VDECEEEDEVLLEMKGQFCAG-IQTIAVIPVLPRGVIQ 172
>01_02_0030 + 10350505-10351227
Length = 240
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 19 NRHEGLKVL*YC**VKKIPMANVSETVVKNIGNVLNDPTRPLKERFRAL 165
NR ++ Y K P+A+++ + N+G V+N+ LKER L
Sbjct: 108 NRERDATIMLYEAATDKRPVADLNVQELTNLGLVINERINHLKERIERL 156
>06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764
Length = 973
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 157 RALFTLRNLGGETAINCISECFKDESVLLKHELAYCLGQMQDKRAIP 297
RAL R++GG+TA CF L H C+ + RA+P
Sbjct: 887 RALRQHRDVGGDTAGAVSRRCFWAVERFLAHGGERCVRDVTADRALP 933
>03_06_0284 +
32836171-32836377,32836466-32836568,32836681-32836757,
32836846-32837037,32837144-32837263,32837350-32837412,
32837537-32837671,32837827-32837991,32838104-32838181,
32840303-32840389,32840548-32840619,32840925-32840951,
32842292-32842390,32843143-32843213,32843710-32843838,
32843936-32844012,32844186-32844226,32844319-32844393,
32844525-32844673,32844766-32844870,32844948-32845023,
32845465-32845541,32845761-32846529
Length = 997
Score = 26.6 bits (56), Expect = 9.7
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 70 IPMANVSETVVKNIGNVLNDPTRPLKERFRALFTLRNLGGETAINCISEC-FKDESVLL 243
+P A+ S + K G+++NDP PLK + F + G A I++ F DE LL
Sbjct: 538 LPAAS-SNALPKYYGDLMNDPNSPLKSFYPKDFEIDMNGKRFAWQGIAKLPFIDERRLL 595
>03_06_0226 +
32495088-32495237,32496189-32496351,32496438-32496576,
32496669-32496945,32497051-32497249,32497379-32497704
Length = 417
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 319 DQNHDPIVRHEAGEALGAIGDPNLREILEKYQYDSAIE 432
D+ DP E +A + DP REI ++Y D+ E
Sbjct: 43 DKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKE 80
>03_06_0071 +
31465707-31466237,31467455-31468075,31468438-31468520,
31468895-31468979
Length = 439
Score = 26.6 bits (56), Expect = 9.7
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 320 SSSTPLRIGIALLSCICPKQYASSCFNSTDSSLKHSLMQFIAVSP-PKLRR 171
SSS+PL + LL + P +S+ F+ +S SL F P P+L R
Sbjct: 3 SSSSPLPLLCLLLLMLLPSPSSSASFSFATASSNASLSTFSDSDPEPELAR 53
>03_05_0497 +
24932336-24932485,24934037-24934199,24934306-24934447,
24934528-24934804,24934887-24935085,24935169-24935491
Length = 417
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 319 DQNHDPIVRHEAGEALGAIGDPNLREILEKYQYDSAIE 432
D+ DP E +A + DP REI ++Y D+ E
Sbjct: 43 DKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKE 80
>02_05_0183 +
26537676-26537752,26538481-26538649,26538736-26538910,
26539008-26539137,26540425-26540558,26540629-26540771,
26540894-26541092,26541183-26541514
Length = 452
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 319 DQNHDPIVRHEAGEALGAIGDPNLREILEKYQYDSAIE 432
D+ DP E +A + DP REI ++Y D+ E
Sbjct: 75 DKGGDPEKFKELAQAYEVLNDPEKREIYDQYGEDALKE 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,604,724
Number of Sequences: 37544
Number of extensions: 209553
Number of successful extensions: 500
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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