Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K04
(463 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14492| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.27
SB_53081| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_55987| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_49365| Best HMM Match : ABC_tran (HMM E-Value=3.5e-38) 29 2.5
SB_55931| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_23286| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
SB_13840| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
>SB_14492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 31.9 bits (69), Expect = 0.27
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Frame = +1
Query: 160 ALFTLRNLGGETA--INCISECFKDESVLLKHELAYCLGQMQDKRAIPILRGVLEDQNHD 333
AL L NLG T + + +CF+ E V ++ E A GQ++ +L G+L+ ++D
Sbjct: 554 ALKKLSNLGIMTVRLLPALIDCFRSEYVSVRIEAAMAAGQLRITDD-KLLEGLLDMASND 612
Query: 334 PI--VRHEAGEALGAIGDPNLREI---LEKYQYDSAIEV-AETC 447
V+ A +ALG +G R I L +Y+ V AE C
Sbjct: 613 RSWKVKAHAIKALGCVGIVTERVIDVLLWAIRYEKVAAVRAEAC 656
>SB_53081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 30.7 bits (66), Expect = 0.61
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 376 GDPNLREILEKYQYDSAIEVAETCQIALE 462
G + ++L +Y D E+AETCQ+AL+
Sbjct: 10 GSQDALDVLRQYANDPLPEIAETCQLALQ 38
>SB_55987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 43
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 353 QVKLLVQLVIQISVKY*KNINTTLQLRWQKHVKLLW 460
Q KL V +I+ K K TTL LRW+ V +LW
Sbjct: 4 QEKLNAIFVKEIATKLSKIAITTLDLRWRNCVDILW 39
>SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1293
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 64 KKIPMANVSETVVKNI-GNVLNDPTRPLKERFRALFTLRNLGGETAINCISECFKDES 234
K +P E +K + +LN P L + A+ LR +G +T I C S K+ S
Sbjct: 725 KPLPPDRTREEHIKFMRARILNRPNEELAQDAEAMEYLREIGPDTMIPCFSFNLKNNS 782
>SB_49365| Best HMM Match : ABC_tran (HMM E-Value=3.5e-38)
Length = 283
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 298 ILRGVLEDQNHDPIVRHEAGEALGAIGDPNLREILEKYQYDSAIEVAE 441
+L G + N DP+ + E A+ D NL +++K+ YD + E
Sbjct: 139 LLSGTIRS-NLDPLDMYTDDEIWSALSDVNLSPVMDKWAYDLEHRIEE 185
>SB_55931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 211
Score = 28.7 bits (61), Expect = 2.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 120 DIADILYNCFADISHWNF 67
++ D+ YNCFA + WNF
Sbjct: 100 ELRDVCYNCFALFTTWNF 117
>SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2061
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -3
Query: 239 STDSSLKHSLMQFIAVSPPKLRRVNKALKRSFNGLVGSFKTLPIFFTTVSLTLAIGIF 66
+T +S + S+ + +PP +AL+ F L +++ P F TL I +F
Sbjct: 125 NTGNSRRESMRNMLKNAPPSSSSKVEALEPCFKPLAPKYRSEPAFTAIQPTTLKIKVF 182
>SB_23286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 26.6 bits (56), Expect = 10.0
Identities = 23/91 (25%), Positives = 38/91 (41%)
Frame = +1
Query: 166 FTLRNLGGETAINCISECFKDESVLLKHELAYCLGQMQDKRAIPILRGVLEDQNHDPIVR 345
F L+N+ + + + + F D ++ L CL + + A ILR +E + V
Sbjct: 3 FLLQNVNADCSC-ALCDSFLDTNISLS-----CLEKTANNYAAKILRSSIEYASPAWAVP 56
Query: 346 HEAGEALGAIGDPNLREILEKYQYDSAIEVA 438
+ L + LR I QYD A+ A
Sbjct: 57 QYLSDMLERVQKKALRVIYPNLQYDQALNAA 87
>SB_13840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 64 LLTNNIIKLLNPRADSCSPG 5
L++ NI+ + P ++SCSPG
Sbjct: 8 LISANIVSYIGPPSNSCSPG 27
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 289 AIPILRGVLEDQNHDPIVRHEAGEALGAIGDPNLREILEKY 411
A+ L G LED HD GEA ++ D + E LE+Y
Sbjct: 4656 ALKSLIGNLEDTGHDLTALSGPGEASDSV-DGKVSECLERY 4695
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,671,095
Number of Sequences: 59808
Number of extensions: 257923
Number of successful extensions: 613
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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