Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K03
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    27   1.2  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   2.0  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   2.0  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   2.7  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   2.7  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    25   6.2  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   8.2  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.2  

>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +1

Query: 280 IQRGSKSNELLIKAAREMASTENQMESADENLKKMQLISVHIGYQYENIHKSAQVLSEIK 459
           I++GS +  L+ K    + + +   E      KK+  I  HIG     +   A+VLS   
Sbjct: 29  IKQGSATVGLVSKTHAVLVALKRNAEELSSYQKKLIRIDDHIGIAIAGLAPDARVLSNYM 88

Query: 460 EQ 465
           +Q
Sbjct: 89  KQ 90


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 19/88 (21%), Positives = 38/88 (43%)
 Frame = +1

Query: 220 QRLAERVQVNMNNITSLGRHIQRGSKSNELLIKAAREMASTENQMESADENLKKMQLISV 399
           ++L E+      N+ +  R ++   K  +L+     E+ S   +   +  NL+K+Q  + 
Sbjct: 274 EKLKEKEGSIRRNLLAFDRKVR---KQEKLIASKRPELISIAEKALESKSNLRKIQRKAA 330

Query: 400 HIGYQYENIHKSAQVLSEIKEQIMAMQK 483
            I   Y +   + QVL      + A +K
Sbjct: 331 EIEKDYSDQASTLQVLENQLTSLSAAEK 358


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 232  ERVQVNMNNITSLGRHIQRGSKSNELLIKAAREMASTENQMESADENLKKMQLISVHIGY 411
            ER +V    +  L   I +  + NELL K  + +      ++    + ++ +  SVH   
Sbjct: 1502 ERKKVMQQEVLRLRSRIAKELQKNELLRKQNQVLQDQVKALQETVVSSEEAESASVHADT 1561

Query: 412  Q-YENIHKSAQVLS 450
            +  EN+ K+ ++LS
Sbjct: 1562 KDLENLKKTEEMLS 1575


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 232  ERVQVNMNNITSLGRHIQRGSKSNELLIKAAREMASTENQ 351
            E V   +  + +L   +Q  + S ELLIK   ++ STE++
Sbjct: 972  EGVFSTLITVDNLDAQVQSCADSTELLIKVLSDLGSTEDE 1011


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 295 KSNELLIKAAREMASTENQMESADENLKKMQLISVHIGYQ 414
           KSN LL+K   +  S  N +E   + L+  Q + ++  YQ
Sbjct: 161 KSNGLLVKPGMDQLSLINGLEEPPKELQSHQSVELYRLYQ 200


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 87  SWSLVLADLTYYTYCY 134
           +W+ +L+ +TYY Y Y
Sbjct: 236 NWARILSQITYYLYSY 251


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 238 PFQLIFVLILRIKNGRCSMTPKSLHRCLLYR 146
           P+ L  VL  R  +GRCS   +SL   +LY+
Sbjct: 46  PYHL-HVLDSRYADGRCSAAMRSLSNYVLYK 75


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 289 LFVCVDLMMLYCSYLLEPFQLIFVLILRIKNG 194
           L    + + L+ +  L PF  +F+ ILR +NG
Sbjct: 443 LLWATEAIPLFVTSFLVPFMTVFLKILRDENG 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,815,774
Number of Sequences: 5004
Number of extensions: 33026
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)