Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K03
         (491 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28378| Best HMM Match : DUF1542 (HMM E-Value=7.7)                   31   0.68 
SB_53077| Best HMM Match : SRP54_N (HMM E-Value=1.8)                   29   2.1  
SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44)           28   4.8  
SB_8121| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-08)                  28   4.8  
SB_114| Best HMM Match : Ribosomal_L30_N (HMM E-Value=2.5)             28   4.8  
SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  

>SB_28378| Best HMM Match : DUF1542 (HMM E-Value=7.7)
          Length = 63

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +1

Query: 292 SKSNELLIKAAREMASTENQMESADENLKKMQLISVHIGYQYENIHKSAQVLSEIKEQIM 471
           SK++  +    ++  S E Q+E+A E LKK +    H   Q E +    Q ++  KE++ 
Sbjct: 2   SKADRQVTNIGKQKESIETQLETAKEELKKSK--ETHCDLQKELLEHQEQ-MANYKEELA 58

Query: 472 AMQK 483
           A  K
Sbjct: 59  AKTK 62


>SB_53077| Best HMM Match : SRP54_N (HMM E-Value=1.8)
          Length = 533

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 313 IKAAREMASTENQ--MESADENLKKMQLISVHIGYQYENIHK 432
           IKA     +T+N   +E   + LKK++    H  Y  +NIH+
Sbjct: 436 IKAKSVFVATDNDPMLEKLTKALKKLEFSKEHTDYDIQNIHR 477


>SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44)
          Length = 945

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 78  LLNSWSLVLADLTYYTYCYYTNSL 149
           LLN WS   A   YYTY  Y NS+
Sbjct: 219 LLNFWSESKAIDNYYTYVLYLNSM 242


>SB_8121| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-08)
          Length = 292

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 78  LLNSWSLVLADLTYYTYCYYTNSL 149
           LLN WS   A   YYTY  Y NS+
Sbjct: 219 LLNFWSESKAIDNYYTYVLYLNSM 242


>SB_114| Best HMM Match : Ribosomal_L30_N (HMM E-Value=2.5)
          Length = 318

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = +1

Query: 265 SLGRHIQRGSKSNELLIKAAREMASTENQMESADENL--KKMQL 390
           SLG++++      + +I A+RE+ + E++  S  +++  KK++L
Sbjct: 6   SLGKYMREAKLKRQKVIDASRELQNLEDEFSSLQQSIVEKKLEL 49


>SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 879

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +1

Query: 217 KQRLAERVQVNMNNITSLGRHIQRGSKSNELLIKAA-REMASTENQMESADENLKKMQ 387
           +++LA+R++     + +  + I    K+  +  KA  RE+    N+ ++A E LKK+Q
Sbjct: 280 REKLAQRLERVEQEMAAKDKKISELQKTINMSEKARQRELKEHRNRYKNAKEELKKVQ 337


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,140,426
Number of Sequences: 59808
Number of extensions: 230482
Number of successful extensions: 468
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)