Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K03
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23511-4|AAC46793.1|  288|Caenorhabditis elegans Temporarily ass...    28   3.2  
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical...    27   5.6  
AL033514-36|CAH19095.1|  222|Caenorhabditis elegans Hypothetical...    27   7.4  
U41107-11|AAC71161.1|  454|Caenorhabditis elegans Hypothetical p...    27   9.8  
U41107-10|AAN39669.1|  416|Caenorhabditis elegans Hypothetical p...    27   9.8  
U41107-9|AAK73877.1|  471|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U41107-8|AAN39670.1|  468|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U23511-4|AAC46793.1|  288|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 337 protein.
          Length = 288

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 468 NLLFDFRQHLS*FMNIFIL 412
           N LF+FR H+  F+N+FIL
Sbjct: 103 NKLFEFRDHIVRFLNMFIL 121


>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
           protein Y39B6A.18 protein.
          Length = 1352

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
 Frame = +1

Query: 244 VNMNNITSLGRHIQRGSKSNELLIKAAREMASTENQMESA-------DENLKKMQLISVH 402
           +  NNI SL + IQ   K  E   KA R + S +N + S        DENLKK+    ++
Sbjct: 446 IRSNNI-SLTK-IQESVKGIENQFKAVR-LDSLKNDVFSKISDVFRKDENLKKVITAEIN 502

Query: 403 IGYQYENIHKSAQVLSEIKEQIMAMQ 480
           +    +N+   + V+SE  + I  ++
Sbjct: 503 VNKCLQNLKNESLVISEALKTIQKLR 528


>AL033514-36|CAH19095.1|  222|Caenorhabditis elegans Hypothetical
           protein Y75B8A.39 protein.
          Length = 222

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +1

Query: 238 VQVNMNNITSLGRHIQRGSKSNELLIKAAREMASTENQMESADEN 372
           +Q   NN  ++ + ++ G   ++ LIK  + +A  EN+++   E+
Sbjct: 81  LQYYNNNKQAIEKMVEHGKSQDQNLIKRQKALADAENELKVKKEH 125


>U41107-11|AAC71161.1|  454|Caenorhabditis elegans Hypothetical
           protein F55C12.1a protein.
          Length = 454

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 295 KSNELLIKAAREMASTENQMESADENLKKMQLISVHIGYQYENIHKSAQ 441
           +SNE   +   E+  TEN++E A   ++ M+   + +  Q+    + AQ
Sbjct: 154 RSNEETKRIRNELEKTENKLEEAQLLVEGMEEERIQLERQFRKFKEEAQ 202


>U41107-10|AAN39669.1|  416|Caenorhabditis elegans Hypothetical
           protein F55C12.1c protein.
          Length = 416

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 295 KSNELLIKAAREMASTENQMESADENLKKMQLISVHIGYQYENIHKSAQ 441
           +SNE   +   E+  TEN++E A   ++ M+   + +  Q+    + AQ
Sbjct: 116 RSNEETKRIRNELEKTENKLEEAQLLVEGMEEERIQLERQFRKFKEEAQ 164


>U41107-9|AAK73877.1|  471|Caenorhabditis elegans Hypothetical
           protein F55C12.1b protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 295 KSNELLIKAAREMASTENQMESADENLKKMQLISVHIGYQYENIHKSAQ 441
           +SNE   +   E+  TEN++E A   ++ M+   + +  Q+    + AQ
Sbjct: 171 RSNEETKRIRNELEKTENKLEEAQLLVEGMEEERIQLERQFRKFKEEAQ 219


>U41107-8|AAN39670.1|  468|Caenorhabditis elegans Hypothetical
           protein F55C12.1d protein.
          Length = 468

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 295 KSNELLIKAAREMASTENQMESADENLKKMQLISVHIGYQYENIHKSAQ 441
           +SNE   +   E+  TEN++E A   ++ M+   + +  Q+    + AQ
Sbjct: 168 RSNEETKRIRNELEKTENKLEEAQLLVEGMEEERIQLERQFRKFKEEAQ 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,959,488
Number of Sequences: 27780
Number of extensions: 183255
Number of successful extensions: 459
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)