Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K03
         (491 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41620.1 68418.m05057 expressed protein weak similarity to mi...    28   3.0  
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c...    27   6.9  
At1g16320.1 68414.m01953 expressed protein ESTs gb|T76348, gb|N6...    27   6.9  

>At5g41620.1 68418.m05057 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 (GI:2773363)
           [Drosophila melanogaster]; weak similarity to
           Synaptonemal complex protein 1 (SCP-1 protein)
           (Swiss-Prot:Q15431) [Homo sapiens]; weak similarity to
           DNA double-strand break repair rad50 ATPase.
           (Swiss-Prot:P58301) [Pyrococcus furiosus]
          Length = 543

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +1

Query: 220 QRLAERVQVNMNNITSLGRHIQRGSKSNELLIKAAREMASTENQMESADENLKKMQL 390
           +++A  +    +++++  + ++RGSKSN+++     E A      E     LKK  L
Sbjct: 216 RKMARELSEVKSSLSNCVKELERGSKSNKMMELLCDEFAKGIKSYEEEIHGLKKKNL 272


>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 673

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
 Frame = +1

Query: 217 KQRLAERVQVNMNNITSLGRHIQRGSKSNELLIKAAREMASTENQMESADENLKKM--QL 390
           + R  E VQ N + I  L       SKS +  +     +   EN+ +++D N++ M  Q+
Sbjct: 166 EMRANELVQHNDDTILKLENAAIERSKSVDSAVLGKYSIWRRENENDNSDSNIRLMRDQV 225

Query: 391 ISVHIGYQYENIHKSAQVLSEIKEQIMAMQK 483
           I   +      +     +L E++ ++   Q+
Sbjct: 226 IMARVYSGIAKLKNKNDLLQELQARLKDSQR 256


>At1g16320.1 68414.m01953 expressed protein ESTs gb|T76348,
           gb|N65615 and gb|Z18119 come from this gene
          Length = 273

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 250 MNNITSLGRHIQRGSKSNELLIKAAREMASTENQMESADENLKKMQLISV 399
           ++N++S   H+Q G   N   I +    +S+    E  +ENL  + L+S+
Sbjct: 5   LSNLSSPSIHLQTGKYPNLKPIFSQSLSSSSSVSYEFVEENLSTLSLLSI 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,033,011
Number of Sequences: 28952
Number of extensions: 156113
Number of successful extensions: 336
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)