Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K02
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    73   2e-14
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    72   4e-14
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    65   4e-12
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   0.82 
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    26   2.5  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    25   3.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   7.7  

>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 72.9 bits (171), Expect = 2e-14
 Identities = 36/104 (34%), Positives = 51/104 (49%)
 Frame = +1

Query: 91  ISLCYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 270
           ++  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ NIGS 
Sbjct: 6   LATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSA 65

Query: 271 VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFGLF 402
                                                 MGFGLF
Sbjct: 66  AAAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEESDEDMGFGLF 109


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 71.7 bits (168), Expect = 4e-14
 Identities = 31/60 (51%), Positives = 46/60 (76%)
 Frame = +1

Query: 91  ISLCYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 270
           ++  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ NIGSG
Sbjct: 6   LATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSG 65


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 64.9 bits (151), Expect = 4e-12
 Identities = 27/59 (45%), Positives = 44/59 (74%)
 Frame = +1

Query: 91  ISLCYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS 267
           ++  Y+ALIL D+ + +T +K+ ++ KA  V+VEP W  +FAKALEG ++++L+ NIGS
Sbjct: 6   LATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGS 64


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 0.82
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = -2

Query: 272 TPDPML---VIKSRTLMPSKAFANRPGQYGSTSTAAAFSMVEIFSPVTATSSSTRIRAE* 102
           +P+P+     IK     PSK F NRP ++ S  +        + S      +S     E 
Sbjct: 297 SPEPIFNNRFIKIFWYNPSKGFHNRPKKFASHKSPTTSDSSNVESSEDVDPASLLQNEEF 356

Query: 101 HKLIQ 87
           HKLI+
Sbjct: 357 HKLIE 361


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +1

Query: 106 SALILVD-DDV--AVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 255
           S L+L +  DV  A++ E+IS IL  +      +W      AL G+N++D I+
Sbjct: 119 SILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALTGLNIKDAIS 170


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 204 RPVRLNIYSSRFQYG*DFLTGNGDIVIYQDKGGVTQANSAFDAILNVI 61
           +PV L   +++F +G   +T N D  I+  K G+ +  S  DA++  +
Sbjct: 66  KPVSLPASTTQFTFGKPAVTANNDSDIHLKKRGLNK--SFIDAVIKSV 111


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 191 STSTAAAFSMVEIFSPVTATSSSTRI 114
           +TST+  ++   I SP + +SSST++
Sbjct: 592 TTSTSVLYTSTPITSPNSTSSSSTQV 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,218,882
Number of Sequences: 5004
Number of extensions: 18825
Number of successful extensions: 51
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)