Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K02
         (402 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    73   1e-13
07_03_0260 + 15928932-15929255,15930174-15930347                       27   4.2  
05_03_0090 - 8330283-8330831                                           27   5.6  
06_01_0099 + 824557-825532,826090-826245,826422-828064                 27   7.3  
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201...    26   9.7  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 38/104 (36%), Positives = 50/104 (48%)
 Frame = +1

Query: 91  ISLCYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 270
           ++   +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI ++GSG
Sbjct: 6   VACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLILSVGSG 65

Query: 271 VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFGLF 402
                                                 MGF LF
Sbjct: 66  GGAAPVAAAAAPAAGGGAAAAPAAEEKKEEAKEESDDDMGFSLF 109


>07_03_0260 + 15928932-15929255,15930174-15930347
          Length = 165

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 23/58 (39%), Positives = 31/58 (53%)
 Frame = -2

Query: 215 ANRPGQYGSTSTAAAFSMVEIFSPVTATSSSTRIRAE*HKLIQLLMPF*MLYVQVAKR 42
           A RP   G+T+ AA  S+V   S V      +  RA  HKL+Q+ +PF +L V  A R
Sbjct: 88  ARRPWA-GATALAAGVSVVTAMSAVLGEFLVSG-RAT-HKLLQMYVPFAVLAVIAALR 142


>05_03_0090 - 8330283-8330831
          Length = 182

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 131 MSPLPVRKSQPY*KRLL*MLSRTGLVYLQRPWRA 232
           +SPL  R+S P     +    + GLV + +PWR+
Sbjct: 122 VSPLQGRRSAPVGHLAIRQADKVGLVLVTQPWRS 155


>06_01_0099 + 824557-825532,826090-826245,826422-828064
          Length = 924

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 192 LNIYSSRFQYG*DFLTGNGDIVIYQDKGGVTQANSAFDAI 73
           L+ Y  R  +  D + GN  + +Y   G V QA   FD +
Sbjct: 692 LHAYMGRMGHSADGVVGNALLDMYAKCGAVDQATEVFDGM 731


>07_03_0537 - 19218461-19218982,19219482-19219868,19219993-19220154,
            19220464-19221117,19221233-19221277,19223300-19223845,
            19223930-19224307,19224642-19225313,19225373-19225456
          Length = 1149

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 203  GQYGSTSTAAAFSMVEIFSPVTATSSS 123
            G +G T+ AAA +  ++F+P T   +S
Sbjct: 942  GDHGHTADAAAAAAADVFTPATMARAS 968


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,590,591
Number of Sequences: 37544
Number of extensions: 145205
Number of successful extensions: 326
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)