Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K02
         (402 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   6e-17
SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_30157| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-40)                 28   2.5  
SB_7622| Best HMM Match : Arfaptin (HMM E-Value=0)                     26   10.0 

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 83.4 bits (197), Expect = 6e-17
 Identities = 36/59 (61%), Positives = 49/59 (83%)
 Frame = +1

Query: 91  ISLCYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS 267
           ++  YSALIL DDDVA+T +KI T++KAA ++VEP+WPGLFAKAL+G N+ DLI + G+
Sbjct: 7   LACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLILSAGA 65


>SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 232 CPPRPLQIDQASTAQHLQQPLSVWLR 155
           CPP+PL +   ST +H  Q    ++R
Sbjct: 412 CPPKPLSLSDTSTLRHNSQTSPTFIR 437


>SB_30157| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-40)
          Length = 312

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +1

Query: 46  LATCTYNI*-NGIKS*ISLCYSALILVDDDVAVT 144
           L+TCTY I  +GI +  S+C+ A+I +D  +AVT
Sbjct: 38  LSTCTYWIATDGIWASASICHLAVISIDRFLAVT 71


>SB_7622| Best HMM Match : Arfaptin (HMM E-Value=0)
          Length = 641

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 248 KSRTLMPSKAFANRPGQYGSTSTAAAFSMVEIFSPV 141
           KS   +PSK   N+PG+   T  +A F++     P+
Sbjct: 587 KSAECLPSKGKNNKPGKGKKTDMSAWFNLFSDLDPL 622


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,515,818
Number of Sequences: 59808
Number of extensions: 145023
Number of successful extensions: 407
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)