Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K02
         (402 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    95   1e-20
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    92   2e-19
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    26   8.8  
AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical ...    26   8.8  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    26   8.8  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 95.5 bits (227), Expect = 1e-20
 Identities = 46/104 (44%), Positives = 60/104 (57%)
 Frame = +1

Query: 91  ISLCYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 270
           ++  Y+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LIT++ SG
Sbjct: 7   LACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSG 66

Query: 271 VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFGLF 402
                                                 MGFGLF
Sbjct: 67  AGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLF 110


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 91.9 bits (218), Expect = 2e-19
 Identities = 45/104 (43%), Positives = 59/104 (56%)
 Frame = +1

Query: 91  ISLCYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 270
           ++  Y+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LIT++ SG
Sbjct: 7   LACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLITSVSSG 66

Query: 271 VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFGLF 402
                                                 MGFGLF
Sbjct: 67  AGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLF 110


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
           protein.
          Length = 1829

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 227 SKAFANRPGQYGSTSTAAAFSMVEIFSPVTATS 129
           S+    + G+ GS  +AAA S VEI  P  +TS
Sbjct: 50  SRKKGGKGGKKGSKKSAAAASKVEIPDPYNSTS 82


>AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical
           protein Y54E5A.4 protein.
          Length = 538

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 197 YGSTSTAAAFSMVEIFSPVTATSSST 120
           +GST+T  AFS   +F   T+T++S+
Sbjct: 471 FGSTATKPAFSGGSLFGATTSTATSS 496


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 227 SKAFANRPGQYGSTSTAAAFSMVEIFSPVTATS 129
           S+    + G+ GS  +AAA S VEI  P  +TS
Sbjct: 50  SRKKGGKGGKKGSKKSAAAASKVEIPDPYNSTS 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,845,223
Number of Sequences: 27780
Number of extensions: 109809
Number of successful extensions: 275
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)