Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K02
         (402 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)...    72   2e-13
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)...    72   2e-13
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)...    71   3e-13
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)...    71   3e-13
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)       71   4e-13
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative     69   9e-13
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid...    27   3.5  
At2g31160.1 68415.m03804 expressed protein contains Pfam profile...    27   4.7  

>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 30/60 (50%), Positives = 45/60 (75%)
 Frame = +1

Query: 91  ISLCYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 270
           ++  Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK  E  NV DLI N+G+G
Sbjct: 7   LACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGAG 66


>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 30/60 (50%), Positives = 45/60 (75%)
 Frame = +1

Query: 91  ISLCYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 270
           ++  Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK  E  NV DLI N+G+G
Sbjct: 7   LACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGAG 66


>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 70.9 bits (166), Expect = 3e-13
 Identities = 30/60 (50%), Positives = 44/60 (73%)
 Frame = +1

Query: 91  ISLCYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 270
           ++  Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI N+G+G
Sbjct: 7   LACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGAG 66


>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 70.9 bits (166), Expect = 3e-13
 Identities = 30/60 (50%), Positives = 44/60 (73%)
 Frame = +1

Query: 91  ISLCYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 270
           ++  Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI N+G+G
Sbjct: 7   LACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGAG 66


>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
          Length = 113

 Score = 70.5 bits (165), Expect = 4e-13
 Identities = 30/60 (50%), Positives = 44/60 (73%)
 Frame = +1

Query: 91  ISLCYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 270
           ++  Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI N+G+G
Sbjct: 7   LACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVGAG 66


>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
          Length = 111

 Score = 69.3 bits (162), Expect = 9e-13
 Identities = 31/60 (51%), Positives = 42/60 (70%)
 Frame = +1

Query: 91  ISLCYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 270
           ++  Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK  E  N+ DLI N+G+G
Sbjct: 6   LACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIMNVGAG 65


>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
           [Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
           Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
          Length = 324

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 224 KAFANRPGQYGSTSTAAAFSMVEIFSPVTATSSSTR 117
           + ++N P  + S  TAA   M +I SP+T +S   R
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSSGEIR 317


>At2g31160.1 68415.m03804 expressed protein contains Pfam profile
           PF04852: Protein of unknown function (DUF640)
          Length = 219

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -2

Query: 248 KSRTLMPSKAFANRPGQYGSTSTAAAFSMVEIFSPVTATSSSTRIRAE 105
           K+R +   K    RP    STS+++A +  + F  +  TSS+T+++ E
Sbjct: 171 KARGVSYEKKKRKRPLPSSSTSSSSAVASHQQFQMLPGTSSTTQLKFE 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,600,721
Number of Sequences: 28952
Number of extensions: 106624
Number of successful extensions: 263
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)