Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K01
(501 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 178 2e-45
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 178 2e-45
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 177 3e-45
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 177 3e-45
At5g47430.1 68418.m05844 expressed protein 30 0.76
At2g25760.2 68415.m03092 protein kinase family protein contains ... 29 1.3
At2g25760.1 68415.m03091 protein kinase family protein contains ... 29 1.3
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 29 2.3
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 29 2.3
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 29 2.3
At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protei... 28 3.1
At5g39690.1 68418.m04806 no apical meristem (NAM) protein-relate... 28 4.1
At3g17180.1 68416.m02191 serine carboxypeptidase S10 family prot... 28 4.1
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con... 28 4.1
At2g14255.1 68415.m01593 zinc finger (DHHC type) family protein ... 28 4.1
At1g78240.1 68414.m09118 dehydration-responsive protein-related ... 28 4.1
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative... 28 4.1
At4g37740.1 68417.m05343 expressed protein identical to transcri... 27 5.4
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138... 27 5.4
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 27 5.4
At4g36980.1 68417.m05240 expressed protein 27 7.1
At3g63530.1 68416.m07156 zinc finger (C3HC4-type RING finger) fa... 27 7.1
At5g63320.1 68418.m07946 expressed protein 27 9.4
At5g10910.1 68418.m01266 mraW methylase family protein contains ... 27 9.4
At4g32670.1 68417.m04651 expressed protein ; expression supporte... 27 9.4
At1g27520.1 68414.m03355 glycoside hydrolase family 47 protein S... 27 9.4
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa... 27 9.4
At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa... 27 9.4
At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa... 27 9.4
At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa... 27 9.4
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 178 bits (433), Expect = 2e-45
Identities = 82/158 (51%), Positives = 111/158 (70%)
Frame = +2
Query: 26 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 205
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 206 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 385
TGR++NVT A+GV VNK++ RI+ KRI++R+EHV+ S+C ++F R K+N+ L +AK
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120
Query: 386 AAGKVVNLKRQPAPPKAAHIVSGAEKPVLLAPIPYEFV 499
A G+ ++ KRQP PK +V G + PIPY+ V
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLET-VTPIPYDVV 157
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 178 bits (433), Expect = 2e-45
Identities = 82/158 (51%), Positives = 111/158 (70%)
Frame = +2
Query: 26 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 205
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 206 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 385
TGR++NVT A+GV VNK++ RI+ KRI++R+EHV+ S+C ++F R K+N+ L +AK
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120
Query: 386 AAGKVVNLKRQPAPPKAAHIVSGAEKPVLLAPIPYEFV 499
A G+ ++ KRQP PK +V G + PIPY+ V
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLET-VTPIPYDVV 157
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 177 bits (431), Expect = 3e-45
Identities = 82/158 (51%), Positives = 110/158 (69%)
Frame = +2
Query: 26 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 205
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 206 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 385
TGR++NVT A+GV VNK++ RI+ KRI++R+EHV+ S+C ++F R K+N+ L AK
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120
Query: 386 AAGKVVNLKRQPAPPKAAHIVSGAEKPVLLAPIPYEFV 499
A G+ ++ KRQP PK +V G + PIPY+ V
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLET-VTPIPYDVV 157
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 177 bits (431), Expect = 3e-45
Identities = 82/158 (51%), Positives = 110/158 (69%)
Frame = +2
Query: 26 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 205
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 206 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 385
TGR++NVT A+GV VNK++ RI+ KRI++R+EHV+ S+C ++F R K+N+ L AK
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120
Query: 386 AAGKVVNLKRQPAPPKAAHIVSGAEKPVLLAPIPYEFV 499
A G+ ++ KRQP PK +V G + PIPY+ V
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLET-VTPIPYDVV 157
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 0.76
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 226 DRTRSRRDREQARP---RQDPTETHQHPHRAR 312
DRTR RRD +++R + TE QH HR R
Sbjct: 720 DRTRDRRDEDRSRDHRHHRGETERSQHHHRKR 751
>At2g25760.2 68415.m03092 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 676
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 229 RTRSRRDREQARPRQDPTETHQHPHRAREALQVQ 330
R+ +RRDR++ P+Q+P Q P R Q++
Sbjct: 5 RSNARRDRDKKNPKQNPIALKQSPVRRNPRRQLK 38
>At2g25760.1 68415.m03091 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 673
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 229 RTRSRRDREQARPRQDPTETHQHPHRAREALQVQ 330
R+ +RRDR++ P+Q+P Q P R Q++
Sbjct: 5 RSNARRDRDKKNPKQNPIALKQSPVRRNPRRQLK 38
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 287 RINIRIEHVKHSKCRQDFLKRVKENERL 370
+ +++IEHV S RQ+F + +K NE++
Sbjct: 920 KFHVKIEHVDRSVRRQEFGRIIKTNEKV 947
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +1
Query: 226 DRTRSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQGERKAVE 375
DR R RR+R++ R++ + + +ARE +V+ + + ++ E A++
Sbjct: 115 DRERDRRERDREPDRRNREKEREEEVKAREKARVEKLVEREKEKELDAIK 164
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 226 DRTRSR-RDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQGERK 366
D+ R R R+RE R R+ E + R RE ++ + RQGER+
Sbjct: 369 DKEREREREREHDRERERQRERERQRARDRERERILERREKERQGERE 416
>At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|Q27294 RNA-binding protein cabeza {Drosophila
melanogaster}; contains Pfam profiles: PF00076 RNA
recognition motif (aka RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 372
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 244 RDREQARPRQDPTETHQHPHRAREALQ 324
RD+E P+ D T T++ PH A A++
Sbjct: 49 RDKETDEPKGDATVTYEDPHAALAAVE 75
>At5g39690.1 68418.m04806 no apical meristem (NAM) protein-related
contains Pfam PF02365 : No apical meristem (NAM)
protein; similar to NAC domain protein NAC2
(GI:21554255) {Arabidopsis thaliana}
Length = 294
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 382 SFLQQPFVLLDALEEVLPALGVLHVLDADVDA 287
SF QQP ++ D LE+ L L H LD D ++
Sbjct: 242 SFQQQPVMIPDDLEDFLAELMEPHSLDGDEES 273
>At3g17180.1 68416.m02191 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase II SP:P08819
[Triticum aestivum] (Carlsberg Res. Commun.
52:297-311(1987))
Length = 478
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 377 EAKAAGKVVNLKRQPAPPKAAH 442
EA+ + KVVNL QP PK +H
Sbjct: 32 EAQNSDKVVNLPEQPLNPKISH 53
>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
contains Pfam profile PF00297: ribosomal protein L3
Length = 271
Score = 27.9 bits (59), Expect = 4.1
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Frame = +2
Query: 119 KVYKVGDIVDIRGNGAVQKGMPH--KVYHGKTGRV-YNVTAH-ALGVIVNKRVRGRILP- 283
+++K GD+VD+ G + KG K +H K G++ + +H ALG I GR+
Sbjct: 155 EIFKEGDLVDVAGT-TIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKG 213
Query: 284 KRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKVVNLKR 415
K++ R+ + + +K KE ++ + GK NL R
Sbjct: 214 KKMPGRMGGTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLR 257
>At2g14255.1 68415.m01593 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain;
low similarity to SP:Q96GR4 Zinc finger DHHC domain
containing protein 12 (Zinc finger protein 400) {Homo
sapiens}
Length = 288
Score = 27.9 bits (59), Expect = 4.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 176 PFVQRHCP*CQRCLPLCTLSCTW 108
P +HCP C+RC+ C W
Sbjct: 125 PVRSKHCPTCKRCVEQFDHHCPW 147
>At1g78240.1 68414.m09118 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 684
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 256 VHDHAESVCGHIVNTPCLTVVY-FVWHTLLYSAIAPNV 146
VHD AES+C ++N TVV+ +T YS+ P V
Sbjct: 392 VHDFAESICWTLLNQQDETVVWKKTINTKCYSSRKPGV 429
>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455, [Capsicum annuum] GI:6899972
Length = 369
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 125 YKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVN 256
Y+ G V + +G + G PHKV R+Y++ + ALG + N
Sbjct: 125 YREGQSVGVIADGIDKNGKPHKV------RLYSIASSALGDLGN 162
>At4g37740.1 68417.m05343 expressed protein identical to
transcription activator GRL2 [Arabidopsis thaliana]
GI:21539882 (unpublished); supporting cDNA
gi|21539881|gb|AY102635.1|
Length = 535
Score = 27.5 bits (58), Expect = 5.4
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 220 QCDRTRSRRDR--EQARPRQDPTETH--QHPHRAREALQVQAGLPQARQGERKAV 372
+C RT ++ R A P Q E H + HR+R+ ++VQ+G Q KAV
Sbjct: 232 RCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEVQSGQNQTAAAASKAV 286
>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 672
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 176 GMPHKVYHGKTGRVYNVTAHALGVIVNK 259
G P K Y+G GR+ AHAL NK
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNK 209
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 205 DRACLQCDRTRSRRDREQARPRQDPTETHQ 294
DR + +R RSR++REQ R +D +Q
Sbjct: 449 DRYEREAERERSRKEREQRRKLEDAERAYQ 478
>At4g36980.1 68417.m05240 expressed protein
Length = 560
Score = 27.1 bits (57), Expect = 7.1
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 235 RSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQGERKAVEG 378
RSRR ++R R + P R +AL + GLP GE A +G
Sbjct: 511 RSRRHSSRSRSRSPSRSLSRSPKRHADALHLIRGLP----GEEAAGQG 554
>At3g63530.1 68416.m07156 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 248
Score = 27.1 bits (57), Expect = 7.1
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +2
Query: 110 TYMKVYKVGDIVDIRGNGAVQK---GMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIL 280
TY ++ ++G+ V G Q+ +P K Y K G +++ ++ + ++ +I
Sbjct: 151 TYEELVELGEAVGTESRGLSQELIETLPTKKY--KFGSIFSRKRAGERCVICQ-LKYKIG 207
Query: 281 PKRINIRIEHVKHSKCRQDFL 343
+++N+ +HV HS+C +L
Sbjct: 208 ERQMNLPCKHVYHSECISKWL 228
>At5g63320.1 68418.m07946 expressed protein
Length = 569
Score = 26.6 bits (56), Expect = 9.4
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 329 RQDFLKRVKEN-ERLLKEAKAAGKVVNLKRQPAPPKA 436
R++F KR++E ERL EAKAA + + A KA
Sbjct: 103 REEFEKRLREEKERLQAEAKAAEEARRKAKAEAAEKA 139
>At5g10910.1 68418.m01266 mraW methylase family protein contains
Pfam profile PF01795: MraW methylase family
Length = 434
Score = 26.6 bits (56), Expect = 9.4
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +2
Query: 254 NKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKVVNL-KRQPAPP 430
N +V R+ + IN+ ++ S+ ++ ++ K + + E A VVN KR+
Sbjct: 21 NNKVLSRLPRRSINVIAGNLNSSETKKKEKEKRKRRKEIEVEKATAEAVVNKEKRRTRSS 80
Query: 431 KAAHIVSGAEKPVLLAPI 484
+ + G E P P+
Sbjct: 81 RGYELADGDEVPSSHVPV 98
>At4g32670.1 68417.m04651 expressed protein ; expression supported
by MPSS
Length = 808
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 207 VLPWYTLCGIPFCTAPLPLMSTMSPTL 127
VLPW C + FCT P+ L T S T+
Sbjct: 282 VLPWLLGCWLHFCTFPI-LGKTASHTV 307
>At1g27520.1 68414.m03355 glycoside hydrolase family 47 protein
Similar to gb|U04299 mannosyl-oligosaccharide
alpha-1,2-mannosidase from Mus musculus. ESTs gb|R84145
and gb|AA394707 come from this gene
Length = 574
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = -2
Query: 71 RTSPWYHDDNPWS--LSYFSLVS 9
R PWYH+ N WS +Y+ L S
Sbjct: 308 RHGPWYHEANMWSGKPTYWQLTS 330
>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 491
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 333 CLHLECFTCSMRMLMRFGRI-LPRTRLFTITPRACAVTL 220
C H C +C + + R + L RT +F +TPR CAV++
Sbjct: 211 CGHTFCRSCLFQSMDRGNKCPLCRTVIF-MTPRTCAVSV 248
>At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 333 CLHLECFTCSMRMLMRFGRI-LPRTRLFTITPRACAVTL 220
C H C +C + + R + L RT +F +TPR CAV++
Sbjct: 211 CGHTFCRSCLFQSMDRGNKCPLCRTVIF-MTPRTCAVSV 248
>At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 333 CLHLECFTCSMRMLMRFGRI-LPRTRLFTITPRACAVTL 220
C H C +C + + R + L RT +F +TPR CAV++
Sbjct: 211 CGHTFCRSCLFQSMDRGNKCPLCRTVIF-MTPRTCAVSV 248
>At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 333 CLHLECFTCSMRMLMRFGRI-LPRTRLFTITPRACAVTL 220
C H C +C + + R + L RT +F +TPR CAV++
Sbjct: 211 CGHTFCRSCLFQSMDRGNKCPLCRTVIF-MTPRTCAVSV 248
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,219,205
Number of Sequences: 28952
Number of extensions: 237834
Number of successful extensions: 792
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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