Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J24
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 330 6e-92
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 195 4e-51
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 189 3e-49
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 103 2e-23
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 94 1e-20
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 77 2e-15
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 39 5e-08
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 38 0.001
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.14
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 27 1.7
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 27 2.3
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 7.0
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 9.3
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 330 bits (812), Expect = 6e-92
Identities = 156/173 (90%), Positives = 163/173 (94%)
Frame = +1
Query: 10 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 189
SLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F
Sbjct: 141 SLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTF 200
Query: 190 TTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEA 369
+TTAEREIVRDIKEKLCYVALDFEQE+ TAA SSSLEKSYELPDGQVITIGNERFR PEA
Sbjct: 201 STTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEA 260
Query: 370 LFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRM 528
LFQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRM
Sbjct: 261 LFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRM 313
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 195 bits (475), Expect = 4e-51
Identities = 88/173 (50%), Positives = 123/173 (71%)
Frame = +1
Query: 10 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 189
SLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F
Sbjct: 141 SLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAF 200
Query: 190 TTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEA 369
TA+ E VR++KEKLCYV+ D E + + ++ L ++Y LPDG+VI +G+ER+ CPE
Sbjct: 201 NRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPEC 260
Query: 370 LFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRM 528
LFQP +G E G+ E +++I DVDIRK LY VLSGG++MY G+ R+
Sbjct: 261 LFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRL 313
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 189 bits (460), Expect = 3e-49
Identities = 85/172 (49%), Positives = 119/172 (69%)
Frame = +1
Query: 10 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 189
+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+
Sbjct: 146 ALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHEL 205
Query: 190 TTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEA 369
++AE+EIVR+IKEK CYVA DF E+ + +Y+LPD Q IT+G E F PE
Sbjct: 206 VSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEV 265
Query: 370 LFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 525
LF P +G EA G+H + SI+ D+D+R LY+N VLSGG+T+ G +R
Sbjct: 266 LFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGER 317
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 103 bits (247), Expect = 2e-23
Identities = 63/172 (36%), Positives = 91/172 (52%), Gaps = 7/172 (4%)
Frame = +1
Query: 34 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAER 207
TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239
Query: 208 EIVRDIKEKLCYVALDFEQEMA--TAASSSSLEKSYELPDGQ--VITIGNERFRCPEALF 375
IKE+ CYV D +E + L+ + E G I +G ERF PE F
Sbjct: 240 -----IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFF 294
Query: 376 QPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRM 528
P + + E N + +D+RK LY N VLSGG+T++ +R+
Sbjct: 295 NPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRL 346
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 93.9 bits (223), Expect = 1e-20
Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 20/183 (10%)
Frame = +1
Query: 40 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 219
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 220 DIKEKLCYVALDFEQEMATAASS--SSLEKSYELPD------------------GQVITI 339
+IKE +CYV+ +F+++M S LE Y LPD QV+ +
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNL 276
Query: 340 GNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIA 519
NERF PE LF PS + + GI E S+ +I+ L N V GG +PG
Sbjct: 277 SNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFH 336
Query: 520 DRM 528
R+
Sbjct: 337 KRL 339
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 76.6 bits (180), Expect = 2e-15
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 9/124 (7%)
Frame = +1
Query: 184 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 363
S+ +R ++ + KE + V LD + A A+S + K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQERFRIS 299
Query: 364 EALFQPSFLGMEAC---------GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGI 516
E LF PSF + G+HE Y SI+ CD ++R L N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359
Query: 517 ADRM 528
++R+
Sbjct: 360 SERL 363
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 38.7 bits (86), Expect(2) = 5e-08
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 406 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRM 528
GI + N I +CDVDIR L N ++ GGT++ G + R+
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRL 366
Score = 33.1 bits (72), Expect(2) = 5e-08
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 277 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 381
++ ++ E +E PDG + G ER++ PE LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 16 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 183
+ASG+ T ++D G S IY+G+ L +G + D L + L ++ +
Sbjct: 141 FASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = +1
Query: 346 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 525
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 526 M 528
+
Sbjct: 654 I 654
Score = 43.2 bits (97), Expect = 2e-05
Identities = 23/91 (25%), Positives = 42/91 (46%)
Frame = +1
Query: 31 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE 210
++GIVL+ G+ SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPS 224
Query: 211 IVRDIKEKLCYVALDFEQEMATAASSSSLEK 303
+ C+V+ D+ ++A A LE+
Sbjct: 225 QAELLMHDHCHVSSDYTHDIAHALDRDILER 255
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 37.5 bits (83), Expect = 0.001
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = +1
Query: 13 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 192
LYA G G+V+D G + PI +G + A +L L GR +T +L +L E +
Sbjct: 188 LYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRESLPTLK 247
Query: 193 TTAEREIVRDIKE 231
++ + DI E
Sbjct: 248 SSGQYVSKEDITE 260
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.7 bits (66), Expect = 0.14
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +1
Query: 16 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 189
+ +G + V+D G + + EG +P++ ++++ G D+T MK+L + +
Sbjct: 286 FGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = -3
Query: 525 TVGNTRVHGGTTRQYCVGVQVFTDVNVTLHDGVVCRLVDATSFHTQERGLEESLWATEP 349
T+G+ +GG GV V T VTLH G C + D T L+ + W P
Sbjct: 227 TLGDDWPNGGEI-DIVEGVNVGTSNQVTLHTGDGCEMEDIKRVMT-GTALQTNCWVDAP 283
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 5 EAHCTRPVVPPVSCWIPAMVYPTQYPSTRVTPY 103
+A P+ WIP MVYP + T+ TP+
Sbjct: 507 KATVNEPIYSKSDGWIPVMVYP--FIDTKQTPF 537
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.0 bits (52), Expect = 7.0
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 453 VNVTLHDGVVCRLVDATSFHTQERGLEESLWATEPFV 343
VN T HDG V + T + Q R +SL + EP V
Sbjct: 610 VNATYHDGTVRYNLFNTYGYDQSRVTYDSLTSIEPNV 646
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 9.3
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +1
Query: 52 SGDGVSHTVPIYEGYALP 105
+G G+ H + + +GYA+P
Sbjct: 157 AGRGIGHQIMVEQGYAMP 174
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 24.6 bits (51), Expect = 9.3
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 223 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQV 330
IKEKL VA EQE + SSL+ S + G V
Sbjct: 111 IKEKLRRVANITEQEQQCIPAESSLDLSIQAMKGVV 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,015
Number of Sequences: 5004
Number of extensions: 42266
Number of successful extensions: 154
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -