Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J24
         (530 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             188   2e-50
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.9  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   7.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.9  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  188 bits (459), Expect = 2e-50
 Identities = 88/88 (100%), Positives = 88/88 (100%)
 Frame = +1

Query: 265 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 444
           EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 445 DVDIRKDLYANTVLSGGTTMYPGIADRM 528
           DVDIRKDLYANTVLSGGTTMYPGIADRM
Sbjct: 61  DVDIRKDLYANTVLSGGTTMYPGIADRM 88


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 376 QPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 486
           + +FLG+    +   +YN +   D  + KDL+   +L
Sbjct: 328 ETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQIL 364


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = +3

Query: 489 WWYHHVPWYC 518
           WW H + W C
Sbjct: 526 WWSHVLGWLC 535


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = +3

Query: 489 WWYHHVPWYC 518
           WW H + W C
Sbjct: 579 WWSHVLGWLC 588


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/40 (22%), Positives = 18/40 (45%)
 Frame = +3

Query: 279 CLQQLPREVLRTPRRSSHHNRKRKVPLPRGSLPALVLGYG 398
           C++  P   +   RR  H      +P+P+ +   ++  YG
Sbjct: 32  CVRVSPVITIEPRRRKFHKPITLTIPVPQAANKGMINQYG 71


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 410 MPQASIPKNEGWKRASGQRNLSFPIVMT 327
           + Q  IP +      +G+RN+  PIV +
Sbjct: 165 LKQVKIPHDIAINSTTGKRNVVTPIVQS 192


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 67  SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 165
           +H +  Y GY  P   +  D A  + T+  MK+
Sbjct: 187 NHQLISYAGYKNPDGTIIGDPANIEFTELCMKL 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,815
Number of Sequences: 438
Number of extensions: 3448
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)