Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J23
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              231   4e-61
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           54   7e-08
SB_47353| Best HMM Match : Neur_chan_memb (HMM E-Value=3.2)            32   0.34 
SB_30690| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-09)        32   0.34 
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)                       29   2.4  
SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3)             29   3.2  
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)              27   7.4  
SB_42525| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_37037| Best HMM Match : PSI (HMM E-Value=0.061)                     27   9.8  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  231 bits (564), Expect = 4e-61
 Identities = 108/158 (68%), Positives = 128/158 (81%)
 Frame = +1

Query: 67  PIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRII 246
           P+R KRK+ELGRP ANTK+G +RIH VR+RGGN K+RA RLDT NF+WGSE  TRK RII
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63

Query: 247 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINK 426
           DVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK  + TE E+ I+NK
Sbjct: 64  DVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNK 123

Query: 427 KRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVAS 540
           KRS    +K  +R+  +KV  G+EEQF TGRL ACV+S
Sbjct: 124 KRSNHCTRKLEARKANAKVAPGMEEQFVTGRLYACVSS 161


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 24/77 (31%), Positives = 46/77 (59%)
 Frame = +1

Query: 127 PQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 306
           P++I   ++ GG+TK +ALR++ G +   S+    +  I+ V+++ +N E +    +VK 
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKG 96

Query: 307 AIVVVDATPFRQWYESH 357
           +IV VD  PF  W++ +
Sbjct: 97  SIVQVDNKPFEDWFQEY 113


>SB_47353| Best HMM Match : Neur_chan_memb (HMM E-Value=3.2)
          Length = 133

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 319 VDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVE 486
           + A   R+W+E         K+ A+L      +I+ +  +K AK+Y+ +QRL  +E
Sbjct: 53  IKANNARKWWEKEMRANQTAKELARLASWRTWVISGETVEKKAKQYVFKQRLQDIE 108


>SB_30690| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-09)
          Length = 193

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 319 VDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVE 486
           + A   R+W+E         K+ A+L      +I+ +  +K AK+Y+ +QRL  +E
Sbjct: 87  IKANNARKWWEKEMRANQTAKELARLASWRTWVISGETVEKKAKQYVFKQRLQDIE 142


>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 424 KKRSQKTAKKYLSRQRLSKVEGGLEE 501
           K+R QK  K Y  RQR +++   LEE
Sbjct: 15  KRRKQKATKSYAERQRRTRINKSLEE 40


>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 226 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 339
           T++ +I D++ N   N  VR +TL+ NA +++D   F+
Sbjct: 18  TKRKKIADILSNEIRN--VRERTLILNAALIIDICVFK 53


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 43  RATGGKRAPIRKKRKYELGRPAANTKLGP 129
           R  GG R P+++   +E  +P+ N + GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797


>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1327

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 334  FRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVE 486
            F Q    H++    +KKG  + +   A+   +R  + AK+ LS Q  ++VE
Sbjct: 930  FDQNVMEHFIKLYKKKKGKNIRKDNRAVQKLRREVEKAKRALSTQHQARVE 980


>SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3)
          Length = 115

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 2   HEGWVSVVIIGIRGGLRAANVRPF 73
           H+GW   VIIG+  G +  + RPF
Sbjct: 31  HKGWGESVIIGVAAGGQEISTRPF 54


>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
          Length = 2007

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 311  LSWWMPHLSGSGMKATTCCHSEGRKVPSSLRL 406
            L+ WM HL    +     CH+EGR   + L L
Sbjct: 1881 LTIWMKHLENWPLHMPIVCHAEGRTTAAILLL 1912


>SB_42525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -1

Query: 153 GSD*VDALGTKLSVGSRAT*LILPLLTNGRTFAARSPPLMPMITTD 16
           GS  +D L  +L+ G R T   +  L +GR  +  SPPL+  I  D
Sbjct: 15  GSGDLDYLERQLNCGLRTT--AVTWLHSGRVVSRNSPPLLGHIVND 58


>SB_37037| Best HMM Match : PSI (HMM E-Value=0.061)
          Length = 284

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 236 LVLLMLFIMPLTMNWCVPKPW*RMLLSW 319
           LVLL+L ++ LT   CV   W   + SW
Sbjct: 213 LVLLLLCVVGLTTTVCVANEWHFKIYSW 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,424,493
Number of Sequences: 59808
Number of extensions: 431238
Number of successful extensions: 984
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)