Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J23
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   257   3e-69
Z81513-2|CAB04186.2|  489|Caenorhabditis elegans Hypothetical pr...    34   0.057
AF515833-1|AAM55225.1|  489|Caenorhabditis elegans synaptonemal ...    34   0.057
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    33   0.17 
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    33   0.17 
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    33   0.17 
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    33   0.17 
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    33   0.17 
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    33   0.17 
Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    31   0.70 
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    31   0.70 
U41992-1|AAA83354.2|  514|Caenorhabditis elegans Importin alpha ...    30   1.2  
AF040995-1|AAB97171.1|  514|Caenorhabditis elegans importin alph...    30   1.2  
AF005266-1|AAQ13407.1|  423|Caenorhabditis elegans importin alph...    30   1.2  
U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z70307-12|CAA94340.1|  405|Caenorhabditis elegans Hypothetical p...    28   4.9  
AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical ...    28   4.9  
AF016674-1|AAB66132.1|  160|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical p...    27   8.6  
Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  257 bits (630), Expect = 3e-69
 Identities = 120/177 (67%), Positives = 142/177 (80%)
 Frame = +1

Query: 10  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 189
           MGISRD WHKR  TG  +    KKRK+ELGRPAANTK+G  R+ LVR+RGGN KYRALRL
Sbjct: 1   MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60

Query: 190 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 369
           D+GNF+W SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LP
Sbjct: 61  DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120

Query: 370 LGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVAS 540
           L RKK AKL+E + AI+NKKRS  T KKY  RQ+ + V+  L EQF+TGRLLA ++S
Sbjct: 121 LARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISS 177


>Z81513-2|CAB04186.2|  489|Caenorhabditis elegans Hypothetical
           protein F26D2.2 protein.
          Length = 489

 Score = 34.3 bits (75), Expect = 0.057
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
 Frame = +1

Query: 235 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEA 405
           T+I+ + Y A   E +  K L+   K +I+ +      +  +S+ +    RKK   +T  
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335

Query: 406 EEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRL 522
           ++AI  ++   +  KK L + + SK E  LEE+    +L
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374


>AF515833-1|AAM55225.1|  489|Caenorhabditis elegans synaptonemal
           complex protein SYP-1 protein.
          Length = 489

 Score = 34.3 bits (75), Expect = 0.057
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
 Frame = +1

Query: 235 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEA 405
           T+I+ + Y A   E +  K L+   K +I+ +      +  +S+ +    RKK   +T  
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335

Query: 406 EEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRL 522
           ++AI  ++   +  KK L + + SK E  LEE+    +L
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 178 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 282
           A+++D G+FAWGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 178 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 282
           A+++D G+FAWGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 178 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 282
           A+++D G+FAWGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 178 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 282
           A+++D G+FAWGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 178 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 282
           A+++D G+FAWGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 178 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 282
           A+++D G+FAWGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 514 QCGIAPPDHPLPWTGAA-CSGTSSLSFDCV 428
           +CG A P +P PW  +A C  T++ + +C+
Sbjct: 486 KCGCADPRYPKPWKRSAWCDSTNTTTLNCL 515


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 514 QCGIAPPDHPLPWTGAA-CSGTSSLSFDCV 428
           +CG A P +P PW  +A C  T++ + +C+
Sbjct: 486 KCGCADPRYPKPWKRSAWCDSTNTTTLNCL 515


>U41992-1|AAA83354.2|  514|Caenorhabditis elegans Importin alpha
           family protein 3 protein.
          Length = 514

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 131 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPI 9
           W  S V  +GRPN     +++G   P  A+L C  S++I +
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQV 423


>AF040995-1|AAB97171.1|  514|Caenorhabditis elegans importin alpha 3
           protein.
          Length = 514

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 131 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPI 9
           W  S V  +GRPN     +++G   P  A+L C  S++I +
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQV 423


>AF005266-1|AAQ13407.1|  423|Caenorhabditis elegans importin alpha-3
           subunit protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 131 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPI 9
           W  S V  +GRPN     +++G   P  A+L C  S++I +
Sbjct: 292 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQV 332


>U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical
           protein C37H5.5 protein.
          Length = 778

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +1

Query: 376 RKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEE 501
           +K G     A++  I K+++ KTAKKY  +++L+++E  L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463


>Z70307-12|CAA94340.1|  405|Caenorhabditis elegans Hypothetical
           protein C39E9.11 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +1

Query: 379 KKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEE 501
           KK  K  + EE    +K+ +K AKK +  +++ K+ GG+++
Sbjct: 79  KKALKKAQKEE----RKKEKKLAKKAMKVEKIPKIGGGIQK 115


>AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical
           protein Y116A8A.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 220 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 342
           CS +    I   ++A+NN ++  KT   N I     TPF Q
Sbjct: 51  CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91


>AF016674-1|AAB66132.1|  160|Caenorhabditis elegans Hypothetical
           protein C03H5.4 protein.
          Length = 160

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -1

Query: 411 FLSLSELGTFLPSEWQQVVAFIPLPERCGIHHDNSILYQGFGTH 280
           FL    LG  LP      V  I    RC  HHD + +Y G+G +
Sbjct: 2   FLFPLVLGFLLPETLNTFVLEIQFMTRCMTHHD-AWIYNGYGCY 44


>Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical
           protein F45E10.1b protein.
          Length = 1549

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +2

Query: 314 SWWMPHLSGSGMKATTCCHSEGRKVPSSLRLRKPS*TKNAVKRQRRST*AG 466
           S + PHLS S  K T   HS+  + PSS   +KPS + +   R R  +  G
Sbjct: 763 SSYSPHLSVSADKDTMSMHSQTSRRPSS---QKPSYSGSYSARSRGGSSTG 810


>Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical
           protein F45E10.1b protein.
          Length = 1549

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +2

Query: 314 SWWMPHLSGSGMKATTCCHSEGRKVPSSLRLRKPS*TKNAVKRQRRST*AG 466
           S + PHLS S  K T   HS+  + PSS   +KPS + +   R R  +  G
Sbjct: 763 SSYSPHLSVSADKDTMSMHSQTSRRPSS---QKPSYSGSYSARSRGGSSTG 810


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,978,851
Number of Sequences: 27780
Number of extensions: 312574
Number of successful extensions: 940
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)