Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J23
(540 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso... 217 4e-57
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri... 212 1e-55
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p... 29 1.5
At5g03650.1 68418.m00324 1,4-alpha-glucan branching enzyme / sta... 29 2.6
At4g25730.1 68417.m03703 FtsJ-like methyltransferase family prot... 28 3.5
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote... 27 6.1
At1g22830.1 68414.m02850 pentatricopeptide (PPR) repeat-containi... 27 6.1
At5g27240.1 68418.m03249 DNAJ heat shock N-terminal domain-conta... 27 8.0
At4g11490.1 68417.m01847 protein kinase family protein contains ... 27 8.0
At3g21750.1 68416.m02744 UDP-glucoronosyl/UDP-glucosyl transfera... 27 8.0
At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / sta... 27 8.0
>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
protein S8 - Zea mays, PIR:T04088
Length = 222
Score = 217 bits (530), Expect = 4e-57
Identities = 113/188 (60%), Positives = 137/188 (72%), Gaps = 11/188 (5%)
Frame = +1
Query: 10 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 186
MGISRD HKRRATGGK+ RKKRKYE+GR ANTKL + + +R RGGN K+RALR
Sbjct: 1 MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
Query: 187 LDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLL 366
LDTGN++WGSE +TRKTR++DVVYNASNNELVRTKTLVK+AIV VDA PF+QWY SHY +
Sbjct: 61 LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120
Query: 367 PLGR-KKGAKLT-----EAEEAII----NKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTG 516
LGR KK A T E EEA + K+S +K SRQ ++ +E+QF +G
Sbjct: 121 ELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASG 180
Query: 517 RLLACVAS 540
RLLAC++S
Sbjct: 181 RLLACISS 188
>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
Length = 210
Score = 212 bits (518), Expect = 1e-55
Identities = 109/178 (61%), Positives = 128/178 (71%), Gaps = 1/178 (0%)
Frame = +1
Query: 10 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 186
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + +R RGGN K+RALR
Sbjct: 1 MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
Query: 187 LDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLL 366
LDTGNF+WGSE TRKTRI+DV YNASNNELVRT+TLVK+AIV VDA PF+Q Y HY +
Sbjct: 61 LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120
Query: 367 PLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVAS 540
+GRKK + EE K+S +K RQ ++ LEEQF +GRLLAC+AS
Sbjct: 121 DIGRKKKGEAVTTEEV----KKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIAS 174
>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
protein / Kunitz family protein similar to trypsin
inhibitor propeptide [Brassica oleracea] GI:841208;
contains Pfam profile PF00197: Trypsin and protease
inhibitor
Length = 215
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 277 LVRTKTLVKNAI-VVVDATPFRQWYESHYLLPLGRKKGAKLTEA 405
L T L NA VVD ++ES+Y+LP+ R +G LT A
Sbjct: 16 LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59
>At5g03650.1 68418.m00324 1,4-alpha-glucan branching enzyme / starch
branching enzyme class II (SBE2-2) identical to starch
branching enzyme class II [Arabidopsis thaliana]
GI:726490
Length = 716
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 112 WQPGDLTHTSSSYEWAHVCRP*PSSYANDHD 20
WQ GD+ +T ++ W+ C SYA HD
Sbjct: 459 WQMGDIIYTLTNRRWSEKC----ISYAESHD 485
>At4g25730.1 68417.m03703 FtsJ-like methyltransferase family protein
contains Pfam profile: PF01728 FtsJ-like
methyltransferase
Length = 821
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 340 QWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSK 480
QW+ + + ++E+ I NKK+S+ +K S+Q+ SK
Sbjct: 539 QWFSQNIFAEAVEEGDLGKDDSEDEIANKKKSKNLSKPDKSKQKASK 585
>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 822
Score = 27.5 bits (58), Expect = 6.1
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 408 GSHHKQKTQSKDSEEVPEQAAPVQGRGWSGGAIPHWT 518
G K K Q ++EVPE PVQ GW HWT
Sbjct: 663 GDFEKDK-QEVLNQEVPEPEKPVQVAGWG-----HWT 693
>At1g22830.1 68414.m02850 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat. Gene
continues on the 3' end of BAC F19G10 gb|AF000657 gene
F19G10.21
Length = 703
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 408 LSLSELGTFLPSEWQQVVAFIPLPERCGIHHDNSI 304
L++SE+ F+P W+Q+ P+ E H D S+
Sbjct: 13 LTVSEICKFIPQSWKQLPR--PISETSKTHDDESV 45
>At5g27240.1 68418.m03249 DNAJ heat shock N-terminal
domain-containing protein
Length = 1104
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 292 FWYAPIHC*RHYKQHQ*YESCGLNIQIPMRSFQYQDAG 179
FW HC YK + Y + LN I RS+ D G
Sbjct: 159 FWTCCEHCGYRYKYLRKYVNILLNCNICQRSYMAYDTG 196
>At4g11490.1 68417.m01847 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 636
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -2
Query: 332 GVASTTTIAFFTKVLVRTNSLLEAL*TTSIIRVLRVEHSDPHAKFP 195
G ++ FF ++V T ++ L T ++ V R +DP + P
Sbjct: 258 GSKRNISVGFFVAIVVATGVVISVLSTLVVVLVCRKRKTDPPEESP 303
>At3g21750.1 68416.m02744 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 473
Score = 27.1 bits (57), Expect = 8.0
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = -2
Query: 329 VASTTTIAFFTKVLVRTNSLLEAL*TTSIIRVLRVEHSDPHAKFPVSRRRARYLVLPPRD 150
+ +TT +A K+LV +++ L T I+ RV + + S R RY++LP RD
Sbjct: 16 IRATTALA---KLLVASDNRLSV---TLIVIPSRVSDDASSSVYTNSEDRLRYILLPARD 69
Query: 149 LT 144
T
Sbjct: 70 QT 71
>At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / starch
branching enzyme class II (SBE2-1) nearly identical to
starch branching enzyme class II [Arabidopsis thaliana]
GI:619939
Length = 858
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 112 WQPGDLTHTSSSYEWAHVCRP*PSSYANDHD 20
WQ GD+T T ++ W C YA HD
Sbjct: 583 WQVGDITFTLTNRRWGEKC----VVYAESHD 609
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,507,731
Number of Sequences: 28952
Number of extensions: 302297
Number of successful extensions: 810
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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