Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J22
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   1.3  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    27   2.3  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    26   3.1  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    26   4.1  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   5.4  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   7.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.1  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   9.4  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 64  KALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQ 189
           K + L  +   I++ K+ GQ TLN        +EK+V  FK+
Sbjct: 174 KLIDLRKREREILQNKNQGQSTLNSLKDRQQALEKEVNIFKE 215


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 298 RGLLGDGNNEPYDDFRLPNGKI-CTSESEF 384
           RG+L D +N   DDF L N +I   SE EF
Sbjct: 38  RGILYDSDNRVVDDFFLNNKRIVLDSEIEF 67


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +2

Query: 329 HTMTSDYLTERSAHLRVNLATHIA--WRAA--VLKSRL---PSTPTTRCTLLCHQPVNR 484
           H M+ D LT+   +   NL T IA  W     + K  L   P+ PTT+C L C + + R
Sbjct: 45  HLMSIDDLTKVKDNAPENLQTIIAVLWDKLEDLQKETLFDDPAAPTTKCALNCMRLLTR 103


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 313 DGNNEPYDDFRLPNGKICTSESEFGNAYSLARSCPKVQT 429
           DGN   Y  FR PN  + T+      A  L+R C K++T
Sbjct: 36  DGNLLLYRFFRSPNTPLHTNYQHVLWALKLSRYCRKLKT 74


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +1

Query: 142 AHGFPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLGK 294
           A G P I+  +  +K  +  +     + +   C+  L VC+   +G ++GK
Sbjct: 133 ASGIPTIKAILSGYKYPDMNVF----FSIKTLCSKSLAVCFSVASGLWVGK 179


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 476 VNRCSEESPQFGQSVYY 526
           +N CS +SP F  S+YY
Sbjct: 19  LNECSIDSPSFRASMYY 35


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 238  CTSKLEVCYFEVNGFYLG 291
            C+S  E CYF+ + FY G
Sbjct: 4062 CSSWKEPCYFDDSDFYFG 4079


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 170 TYSRSNRPTDVSASALNTD*WPS 238
           T+++ + P+DVSAS LN    PS
Sbjct: 332 TFNQPSGPSDVSASFLNLQAMPS 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,145
Number of Sequences: 5004
Number of extensions: 44387
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)