Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J22
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0037 - 7613632-7613727,7614452-7615507 30 1.3
10_06_0006 - 9496990-9497592,9497695-9497802,9497884-9497997,949... 27 7.2
02_04_0510 + 23558111-23559613 27 7.2
11_04_0179 + 14562288-14562860,14562874-14563489,14563529-145636... 27 9.5
07_03_0262 + 15944259-15944514,15945524-15945597,15946320-159464... 27 9.5
01_06_1791 - 39907362-39907453,39907682-39907753,39907941-399080... 27 9.5
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 27 9.5
01_01_1214 - 9793854-9794003,9795418-9795456,9795604-9795702,979... 27 9.5
>11_02_0037 - 7613632-7613727,7614452-7615507
Length = 383
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +1
Query: 328 PYDDFRLPNGKICTSESEFGNAYSLARSCPKVQTPE-HSHHQMHAALPP 471
P+ + G + +G AY+ AR+ P P H HH H + P
Sbjct: 223 PHHHHKNGGGLLVAGGDPYGAAYAAARALPPPPPPPPHGHHHHHQIIMP 271
>10_06_0006 -
9496990-9497592,9497695-9497802,9497884-9497997,
9498170-9498219,9498346-9498434,9498542-9498738,
9498877-9499038,9499337-9499455,9499579-9499666,
9499744-9499849,9499968-9500056,9500167-9500319,
9500434-9500526,9500625-9500691,9500811-9500923,
9501544-9501639,9501782-9501961
Length = 808
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 25 NFTVLLQLQNGQPKALVLEDK-SGTIIELKDNGQ-VTLNGAAHGFPVIEKDVFAFKQTNG 198
N +L + G P + + G++ + G VTL+ AHG + DV +F G
Sbjct: 697 NTLILFEEAGGDPSEVAVRTVVEGSVCASAEVGDTVTLSCGAHGRTISSVDVASFGVARG 756
Query: 199 RIG 207
R G
Sbjct: 757 RCG 759
>02_04_0510 + 23558111-23559613
Length = 500
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 322 CYHRREDHVVCLGRNHSLRSSKPQV*KYRRPLIRI 218
CY+ R+D + + + +S KP + Y RPL+R+
Sbjct: 371 CYYGRDDDALNVLKEMEAQSCKPDIQSY-RPLLRL 404
>11_04_0179 +
14562288-14562860,14562874-14563489,14563529-14563658,
14563694-14564540
Length = 721
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 53 TDSPRHWFWRTRAEPSLSLKTMDR*H*MELPTAS 154
T PR+ +WR +P+LS K +++ + P+AS
Sbjct: 662 TTMPRNRYWRKPVKPTLSAKKLEQSAQRKPPSAS 695
>07_03_0262 +
15944259-15944514,15945524-15945597,15946320-15946400,
15946621-15946713,15946946-15947014,15947578-15947697,
15948342-15948413,15948624-15948701,15949463-15949654
Length = 344
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +3
Query: 111 RQWTGDTEWSCPRLPCH*EG--RIRVQTD 191
R W T WSC R C G R+R+ T+
Sbjct: 51 RDWWWSTSWSCWRKACRKSGGDRLRILTE 79
>01_06_1791 -
39907362-39907453,39907682-39907753,39907941-39908045,
39908212-39908302,39908787-39908849,39909448-39909497,
39909632-39909716
Length = 185
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +1
Query: 58 QPKALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQTNGRIGLGSKYGLMAF 237
+P++ L+ G I++ G +T +G+ D F F NG++ G GL+
Sbjct: 47 KPESCTLQAHKGDKIKVHYRGSLT-DGSVFDSSYDRGDPFEFTLGNGQVIKGWDQGLLGM 105
Query: 238 CTSK 249
C +
Sbjct: 106 CVGE 109
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 49 QNGQPKALVLEDKSGTIIELKDNG---QVTLNGAAHGFPVIEKDVFAFK 186
++ Q + LVL+DKS + + KD Q NG V +KD+ A +
Sbjct: 363 EDKQKEILVLQDKSNMMQDKKDQNNLEQTNSNGGEEELQVKDKDLVALE 411
>01_01_1214 -
9793854-9794003,9795418-9795456,9795604-9795702,
9795779-9795907,9796473-9796619,9797513-9797643,
9798497-9798716,9798858-9798951,9799021-9799133,
9799799-9799903,9800008-9800112,9800762-9800849,
9800933-9801054,9801130-9801189,9802313-9802408,
9802506-9802658,9802752-9802838,9803995-9804062,
9804429-9804552,9805057-9805152,9805250-9805359,
9805459-9805573,9806877-9806942,9807260-9807420,
9807927-9808167
Length = 972
Score = 27.1 bits (57), Expect = 9.5
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = -1
Query: 186 FEREYVLLNDREAVGSSIQCH--LSIVFKLNDGSALVLQNQCLGLSVL*LQEYSEVSVNV 13
F R YV +A+ SS Q + LS + LND LVL N +G L+ Y+EV+VN+
Sbjct: 550 FRRSYV---GDQAMHSSKQLYARLSELLGLNDH--LVLLNAIVGKIATNLKCYAEVAVNL 604
Query: 12 VAS 4
A+
Sbjct: 605 EAT 607
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,472,583
Number of Sequences: 37544
Number of extensions: 331755
Number of successful extensions: 1037
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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