Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J22
(534 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 6e-04
SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.036
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 35 0.036
SB_27645| Best HMM Match : VWD (HMM E-Value=0.016) 31 0.45
SB_47158| Best HMM Match : pKID (HMM E-Value=0.22) 29 3.2
SB_14011| Best HMM Match : DUF765 (HMM E-Value=1.6) 29 3.2
SB_51924| Best HMM Match : PALP (HMM E-Value=3.1e-05) 28 5.5
SB_49264| Best HMM Match : Ank (HMM E-Value=3.7e-22) 27 7.3
SB_18955| Best HMM Match : rve (HMM E-Value=5.9e-17) 27 7.3
>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1472
Score = 44.8 bits (101), Expect = 4e-05
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Frame = +1
Query: 49 QNGQPKALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVFA-FKQTNGRIGLGSKYG 225
QN ++++ II++ + VT+NG A V E A + RI + Y
Sbjct: 1351 QNRLHLQVIVKITKQVIIKVSPDLTVTVNGKACEDKVCEVSGAARIVRREQRIKVQINYK 1410
Query: 226 L----MAFCTSKLEVCYFEVNGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNA 393
L + + ++++V N F +LRGL GD N E YD+F+ P G+ + +F A
Sbjct: 1411 LSSLHVVYMPNRIQV---HANPFLQNRLRGLCGDMNGEQYDEFQSPTGEFLNNADQFQKA 1467
Query: 394 YSL 402
+ L
Sbjct: 1468 WRL 1470
>SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 62
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 274 NGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYSL 402
N F +LRGL GD N E YD+F+ P G+ + +F A+ L
Sbjct: 18 NPFLQNRLRGLCGDMNGEQYDEFQSPTGEFLNNADQFQKAWRL 60
>SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 283 YLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYSL 402
Y G GL G+ N P DDF + NG+ S+ EFG ++SL
Sbjct: 176 YRGNTCGLCGNFNGVPSDDFMMKNGRYARSDREFGKSWSL 215
>SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 35.1 bits (77), Expect = 0.036
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 301 GLLGDGNNEPYDDFRLPNGKICTSESEFGNAYSL 402
GLLG NNE +D+ PNGK S EF N++ +
Sbjct: 63 GLLGTNNNEHHDEMTKPNGKHAGSLIEFVNSWEV 96
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 35.1 bits (77), Expect = 0.036
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 301 GLLGDGNNEPYDDFRLPNGKICTSESEFGNAYSL 402
GLLG NNE +D+ PNGK S EF N++ +
Sbjct: 1811 GLLGTNNNEHHDEMTKPNGKHAGSLIEFVNSWEV 1844
>SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)
Length = 237
Score = 31.5 bits (68), Expect = 0.45
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 250 LEVCYFEVNGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNA 393
L V + FY G GL GD +N P +DF P G+ T +F +
Sbjct: 187 LNVLFTPTAAFY-GNTGGLCGDMDNNPANDFTGPTGERFTDAVQFAES 233
>SB_47158| Best HMM Match : pKID (HMM E-Value=0.22)
Length = 309
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 123 LSIVFKLNDGSALVLQNQCLGLS 55
+ I K N+G ++VL+N CLG++
Sbjct: 32 IEISLKTNEGDSMVLENWCLGMN 54
>SB_14011| Best HMM Match : DUF765 (HMM E-Value=1.6)
Length = 217
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 123 LSIVFKLNDGSALVLQNQCLGLS 55
+ I K N+G ++VL+N CLG++
Sbjct: 32 IEISLKTNEGDSMVLENWCLGMN 54
>SB_51924| Best HMM Match : PALP (HMM E-Value=3.1e-05)
Length = 407
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 428 VWTLGQLRARLYALPNSLSDVQI 360
VW LGQ+ L+ S+SDVQ+
Sbjct: 74 VWALGQVAGSLWMATTSVSDVQV 96
>SB_49264| Best HMM Match : Ank (HMM E-Value=3.7e-22)
Length = 775
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 147 VGSSIQCHLSIVFKLNDGSALVLQNQCLGLSVL 49
+GSSI CH+ +F+L + + NQ + VL
Sbjct: 435 MGSSINCHVRALFRLTWKACTEVDNQATKMPVL 467
>SB_18955| Best HMM Match : rve (HMM E-Value=5.9e-17)
Length = 421
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +1
Query: 268 EVNGFYLGKLRGLLGDGNNEPYDDFRLPNGKICT 369
EVN F L K G DG + P LP G + T
Sbjct: 384 EVNAFELAKFLGNRSDGMSNPTYSLPLPGGLVDT 417
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,471,563
Number of Sequences: 59808
Number of extensions: 360649
Number of successful extensions: 964
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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