Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J22
(534 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g33811.1 68414.m04180 GDSL-motif lipase/hydrolase family prot... 29 1.9
At1g70280.2 68414.m08086 NHL repeat-containing protein contains ... 28 4.5
At1g70280.1 68414.m08085 NHL repeat-containing protein contains ... 28 4.5
At5g58170.1 68418.m07281 glycerophosphoryl diester phosphodieste... 27 5.9
At5g58050.1 68418.m07265 glycerophosphoryl diester phosphodieste... 27 5.9
At3g59870.1 68416.m06681 expressed protein hypothetical protein ... 27 5.9
At3g06660.1 68416.m00784 PAPA-1-like family protein / zinc finge... 27 5.9
At5g12970.1 68418.m01487 C2 domain-containing protein contains I... 27 7.9
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 27 7.9
At1g79220.1 68414.m09236 mitochondrial transcription termination... 27 7.9
At1g22275.1 68414.m02784 expressed protein 27 7.9
>At1g33811.1 68414.m04180 GDSL-motif lipase/hydrolase family protein
similar to family II lipases EXL3 GI:15054386, EXL1
GI:15054382, EXL2 GI:15054384 from [Arabidopsis
thaliana]; contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase
Length = 370
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 109 KDNGQVTLNGAAHGFPVIEKDVFAFKQTNGRI 204
K + +NGAA+GF V++K + NG+I
Sbjct: 286 KSTYDLAVNGAAYGFEVVDKGCCGVGRNNGQI 317
>At1g70280.2 68414.m08086 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 509
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 325 EPYDDFRLPNGKICTSESEFGNAYSLARSCPKVQTP 432
EPY LPNG++ +SE N Y ++ S P
Sbjct: 84 EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 119
>At1g70280.1 68414.m08085 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 447
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 325 EPYDDFRLPNGKICTSESEFGNAYSLARSCPKVQTP 432
EPY LPNG++ +SE N Y ++ S P
Sbjct: 22 EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 57
>At5g58170.1 68418.m07281 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam PF03009 :
Glycerophosphoryl diester phosphodiesterase family;
similar to Glycerophosphoryl diester phosphodiesterase
precursor (Glycerophosphodiester phosphodiesterase)
(Surface-exposed lipoprotein D) (Protein D)
(ImmunoglobulinD-binding protein) (IGD-binding protein)
(SP:Q06282) {Haemophilus influenzae}
Length = 750
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 82 DKSGTIIELKDNGQVTLNGAAHGF-PVIEKDVFAFKQTNGRI 204
D S ++ DNGQ +++G F P + + F NG +
Sbjct: 308 DPSAEYLQFVDNGQFSVDGVITDFPPTASQSITCFSHQNGNL 349
>At5g58050.1 68418.m07265 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam PF03009 :
Glycerophosphoryl diester phosphodiesterase family;
similar to Glycerophosphoryl diester phosphodiesterase
precursor (Glycerophosphodiester phosphodiesterase)
(Surface-exposed lipoprotein D) (Protein D)
(ImmunoglobulinD-binding protein) (IGD-binding protein)
(SP:Q06282) {Haemophilus influenzae}
Length = 753
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 82 DKSGTIIELKDNGQVTLNGAAHGF-PVIEKDVFAFKQTNGRI 204
D S ++ DNGQ +++G F P + + F NG +
Sbjct: 308 DPSAEYLQFVDNGQFSVDGVITDFPPTASQSITCFSHQNGNL 349
>At3g59870.1 68416.m06681 expressed protein hypothetical protein
F6E13.7 - Arabidopsis thaliana, PIR:T00674
Length = 288
Score = 27.5 bits (58), Expect = 5.9
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +2
Query: 17 LTETSLYSCSYRTDSPRHWFWRTRAEPSLSLKTMDR*H*MELPTASLSLRRTYSRSNRPT 196
LT TSL +R+D+P F+R R+ S S + + S+RR SRS+ P+
Sbjct: 13 LTTTSLLPSPFRSDNPN--FYRRRSSSSTSCSSQSQ------SFQLFSVRRRRSRSSSPS 64
>At3g06660.1 68416.m00784 PAPA-1-like family protein / zinc finger
(HIT type) family protein contains Pfam domains,
PF04795: PAPA-1-like conserved region and PF04438: HIT
zinc finger
Length = 427
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +1
Query: 7 GDYVDRNFTVLLQLQNGQPKALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVF 177
G + V L+L G + L ++GT + DNGQ G ++K +F
Sbjct: 66 GSVSENKLKVKLKLGAGVTRTLQTNSEAGTYTKALDNGQKPFQSKVKGNGHVQKTLF 122
>At5g12970.1 68418.m01487 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 769
Score = 27.1 bits (57), Expect = 7.9
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 175 FAFKQTNGRIGLGSKYGLMAFCTSKL--EVCYFEVNGFYLGKLRGLLGDGNNEPYDDFRL 348
FA K+T+ +IG GS G T L ++ Y V +L G G+ +PY + +L
Sbjct: 10 FALKETSPKIGAGSVTGDKLCSTYDLVEQMHYLYVRVVKAKELPGKDVTGSCDPYVEVKL 69
Query: 349 PNGKICTSESE 381
N + T E
Sbjct: 70 GNYRGMTKHFE 80
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 352 NGKICTSESEFGNAYSLARSCPKVQTPEHSHHQMHAALPPACEQV 486
+GK C + G+ +LA P +Q Q H+ P C +V
Sbjct: 410 DGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRV 454
>At1g79220.1 68414.m09236 mitochondrial transcription termination
factor family protein / mTERF family protein weak
similarity to mtDBP protein [Paracentrotus lividus]
GI:4584695; contains Pfam profile PF02536: mTERF
Length = 399
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 404 RAAVLKSRLPSTPTTRCTLLCHQPVNRCSEES 499
R A ++ + +T TTRC+ LC C E+S
Sbjct: 24 RKAGCRNLISATFTTRCSTLCLNESEECIEDS 55
>At1g22275.1 68414.m02784 expressed protein
Length = 856
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +2
Query: 290 ANYVVFSAMVTMSHTMTSDYLTERSAHLRVNLATHIAWRAAVLKSRLPSTPTTRCTLLCH 469
+ ++ S V T S+ L E + + TH + R+P TR T +
Sbjct: 743 SEHITESPFVKAKVTSVSNILKEATNPKHHSKVTHREYEVETNNGRIPKRRKTRQTTMFQ 802
Query: 470 QPVNRCSEESPQ 505
+P R + +P+
Sbjct: 803 EPQRRSTRLTPK 814
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,986,452
Number of Sequences: 28952
Number of extensions: 249387
Number of successful extensions: 716
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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