Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J21
(587 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 217 2e-55
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 144 2e-33
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 118 1e-25
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 116 5e-25
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 110 3e-23
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 79 8e-14
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 77 3e-13
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 77 4e-13
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 73 7e-12
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 71 3e-11
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 69 6e-11
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 67 2e-10
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 54 1e-09
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 64 3e-09
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 61 2e-08
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 61 2e-08
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 58 2e-07
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 58 2e-07
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 55 1e-06
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 54 3e-06
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 50 3e-05
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 48 2e-04
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 48 2e-04
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 40 0.033
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 39 0.100
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 36 0.70
UniRef50_Q9RH14 Cluster: Putative uncharacterized protein; n=2; ... 35 1.6
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 35 1.6
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 34 2.1
UniRef50_Q4P7G8 Cluster: Putative uncharacterized protein; n=1; ... 34 2.1
UniRef50_Q5KNJ1 Cluster: ATP-binding cassette (ABC) transporter,... 33 6.5
UniRef50_Q1JVH7 Cluster: Putative uncharacterized protein; n=1; ... 32 8.6
UniRef50_A6VTI6 Cluster: Acyltransferase 3 precursor; n=1; Marin... 32 8.6
UniRef50_Q8T248 Cluster: Similar to Dictyostelium discoideum (Sl... 32 8.6
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 217 bits (529), Expect = 2e-55
Identities = 105/148 (70%), Positives = 112/148 (75%)
Frame = +3
Query: 144 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 323
RNYDLGNGV+RFSKS+M+HKKA YKF+G TVVVKQIGGEKNGGTRTV L
Sbjct: 30 RNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGTRTVPL 89
Query: 324 KSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 503
K RKSFYPTQ+KIR S G+ FSKHVRR RPNL GTVCILLAGRHAGKR
Sbjct: 90 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 149
Query: 504 XXXFTGPFAFNACPLRRIPQRYVIGTST 587
TGPFAFN+CPLRRIPQRYVIGTST
Sbjct: 150 LLLVTGPFAFNSCPLRRIPQRYVIGTST 177
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 144 bits (348), Expect = 2e-33
Identities = 72/147 (48%), Positives = 90/147 (61%)
Frame = +3
Query: 147 NYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLLK 326
N L G+LR+SK++MY ++A+Y+ VK+IGG KNGG RTV LK
Sbjct: 23 NSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERTVFLK 82
Query: 327 SRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXX 506
K+ YPT+ ++ R +FS+H R TR NLTPGTV ILLAGRH GKR
Sbjct: 83 KSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGL 142
Query: 507 XXFTGPFAFNACPLRRIPQRYVIGTST 587
TGPFA N+CPLRR+ QRYVIGTS+
Sbjct: 143 LLVTGPFALNSCPLRRVSQRYVIGTSS 169
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 118 bits (283), Expect = 1e-25
Identities = 66/154 (42%), Positives = 84/154 (54%), Gaps = 6/154 (3%)
Frame = +3
Query: 144 RNYDLGNGVLRFSKSRMYHKKAIYK----FVGXXXXXXXXXXXXTVVVKQIGGEKNGGTR 311
RN L G+ R+S+S MY +KA+YK V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 312 TVLLKSRKSFYPTQDKIRGR-SHGKS-FSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXX 485
V L+ +YPT+D R SHGK FS+HVR+ R ++TPGT+ I+L GRH GKR
Sbjct: 106 VVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFL 165
Query: 486 XXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST 587
TGP N PLRR Q++VI TST
Sbjct: 166 KQLASGLLLVTGPLVLNRVPLRRTHQKFVIATST 199
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 116 bits (278), Expect = 5e-25
Identities = 63/150 (42%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
Frame = +3
Query: 144 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 323
+N+ L GV FS+S+M+HK+ ++K V VK++ GEKNGG R + L
Sbjct: 26 KNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLPL 85
Query: 324 KSRKSFYPTQDKIRGR--SHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXX 497
K + YPT+D + + SH K S+ R +TPGTV ILLAG H GKR
Sbjct: 86 KKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRVVFLKQLK 145
Query: 498 XXXXXFTGPFAFNACPLRRIPQRYVIGTST 587
TGP+ N CPLRRI Q YVI TST
Sbjct: 146 TGLLPVTGPYGVNGCPLRRINQIYVIATST 175
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 110 bits (264), Expect = 3e-23
Identities = 62/148 (41%), Positives = 80/148 (54%)
Frame = +3
Query: 144 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 323
RN +L G+ R+S+S +Y K+A+YK T K IGG+KNGG R V +
Sbjct: 11 RNPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPV 69
Query: 324 KSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 503
+ +YPT+D R ++ K + + R ++TPGTV ILLAG H GKR
Sbjct: 70 QRESRYYPTEDVRRRLANRKK--PGMAKLRSSITPGTVLILLAGAHRGKRVVFLKQLNSG 127
Query: 504 XXXFTGPFAFNACPLRRIPQRYVIGTST 587
TGPF N PLRRIPQ YVI TST
Sbjct: 128 LLLVTGPFKINGVPLRRIPQSYVIATST 155
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 79.0 bits (186), Expect = 8e-14
Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Frame = +3
Query: 267 VVVKQIGGEKNGGTRTVLLKSRKSFYPTQDKIRGRSHGKSFS-KHVRRTRPNLTPGTVCI 443
V+ K+IGG+KNGGTR V + FYP + + R H + + K+ + R +L PGT+ I
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSRQK-RFHRRLVNNKNPPKIRKSLQPGTILI 102
Query: 444 LLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST 587
LLAG + GKR +GP N PLRR+ Q+ VI TST
Sbjct: 103 LLAGVNRGKRVVLLKALKSGLLLVSGPLKVNRVPLRRVHQKLVIATST 150
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 77.0 bits (181), Expect = 3e-13
Identities = 47/106 (44%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Frame = +3
Query: 288 GEKNGGTRTVLLKSRKSF---YPTQD---KIRGRSHGKSFSKHVRRTRPNLTPGTVCILL 449
G + T+ L+K + F Y TQ K+R R K FS HVR+ R ++ PGTV ILL
Sbjct: 42 GLRTPKTKEALVKPKTRFPRSYVTQQGKRKLRLR-RAKCFSNHVRKIRSSIQPGTVLILL 100
Query: 450 AGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST 587
AG H GKR TGPF +N PLRR+ Q YVI TST
Sbjct: 101 AGPHKGKRVIFLKALKSGLLLVTGPFKYNGVPLRRVNQCYVIATST 146
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 76.6 bits (180), Expect = 4e-13
Identities = 44/107 (41%), Positives = 54/107 (50%)
Frame = +3
Query: 267 VVVKQIGGEKNGGTRTVLLKSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCIL 446
++ K IGG KNGG R V K +YP DK K+ K + RP++ GT+ IL
Sbjct: 22 MIKKPIGGAKNGGYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIVIL 80
Query: 447 LAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST 587
LAG G R TGP+A N PL R+ QRYVI TST
Sbjct: 81 LAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLTRVDQRYVIATST 127
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 72.5 bits (170), Expect = 7e-12
Identities = 49/148 (33%), Positives = 69/148 (46%)
Frame = +3
Query: 144 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 323
RN DL GV ++S+S+MYHK+ ++ + V +
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPV------------- 58
Query: 324 KSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 503
+ FYP +D ++ + +K + R ++TPGTV I+LAGR GKR
Sbjct: 59 EKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
Query: 504 XXXFTGPFAFNACPLRRIPQRYVIGTST 587
TGPF N PLRR+ Q YVIGTST
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTST 144
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 70.5 bits (165), Expect = 3e-11
Identities = 34/67 (50%), Positives = 39/67 (58%)
Frame = +3
Query: 387 FSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQR 566
F+ H RR R ++TPG V ILLAGRH KR TGPF +N PLRR+ QR
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Query: 567 YVIGTST 587
YVI T T
Sbjct: 146 YVIATKT 152
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 69.3 bits (162), Expect = 6e-11
Identities = 43/112 (38%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Frame = +3
Query: 264 TVVVKQIGGEKN--GGTRTVLLKSRKS--FYPTQDKIRGRSHGKSFSKHVRRTRPNLTPG 431
T+ K +G K G R + S+K+ +YP D+ + + K+ H + RP+L PG
Sbjct: 4 TLDSKSVGQTKKFGKGERVIPHPSQKAQKWYPADDEPQPKKARKT--AHPTKLRPSLQPG 61
Query: 432 TVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST 587
T+ ILLAGR GKR TGPF N PLRR+ RYVI TS+
Sbjct: 62 TILILLAGRFRGKRVILLKHLGQGVLLVTGPFKLNGVPLRRVNARYVIATSS 113
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 67.3 bits (157), Expect = 2e-10
Identities = 41/95 (43%), Positives = 48/95 (50%)
Frame = +3
Query: 303 GTRTVLLKSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXX 482
G R + K+ K +IR + K K R ++TPGTV I+LAGR AGKR
Sbjct: 54 GKRVIAAKASKFAPSIPAEIRSTAAKKVQQKVA--LRKSITPGTVLIILAGRFAGKRVVA 111
Query: 483 XXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST 587
TGPF N PLRRI QRYVI TST
Sbjct: 112 LKQLDSGLILITGPFKVNGVPLRRIDQRYVIATST 146
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 54.4 bits (125), Expect(2) = 1e-09
Identities = 38/98 (38%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +3
Query: 294 KNGGTRTVLLKSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 473
K G + K + P + G SK V R LTPGTV I+LAGRH GKR
Sbjct: 31 KKGEKKPKFTKDTSAKLPKLQR-NGTKFALGHSKTVT-LRKTLTPGTVLIVLAGRHKGKR 88
Query: 474 XXXXXXXXXXXXXF-TGPFAFNACPLRRIPQRYVIGTS 584
TGP N PLRRI Q +VI TS
Sbjct: 89 VVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Score = 30.7 bits (66), Expect(2) = 1e-09
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 144 RNYDLGNGVLRFSKSRMYHKK 206
RN+DL GVLRFS SR+ KK
Sbjct: 12 RNFDLSPGVLRFSASRLRLKK 32
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 63.7 bits (148), Expect = 3e-09
Identities = 36/87 (41%), Positives = 44/87 (50%)
Frame = +3
Query: 327 SRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXX 506
S FYP D ++ R + + R ++TPGTV ILLAGR GKR
Sbjct: 49 SAPKFYPADD-VKPRQPSTR-KPNPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGL 106
Query: 507 XXFTGPFAFNACPLRRIPQRYVIGTST 587
TGPF N P+RR+ Q YVI TST
Sbjct: 107 LLVTGPFKINGVPIRRVNQPYVIATST 133
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 61.3 bits (142), Expect = 2e-08
Identities = 34/83 (40%), Positives = 44/83 (53%)
Frame = +3
Query: 339 FYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFT 518
+YP++D + K+ ++ R +L PGTV ILLAGR GKR +
Sbjct: 9 WYPSEDVAALKKTRKA--ARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLIS 66
Query: 519 GPFAFNACPLRRIPQRYVIGTST 587
GPF N PLRR+ RYVI TST
Sbjct: 67 GPFKVNGVPLRRVNARYVIATST 89
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 60.9 bits (141), Expect = 2e-08
Identities = 31/70 (44%), Positives = 39/70 (55%)
Frame = +3
Query: 378 GKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRI 557
G+ ++ V + R +L PG V ILL G + GKR TGPF+FN PLRR+
Sbjct: 31 GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVLKSGLLLVTGPFSFNGVPLRRV 89
Query: 558 PQRYVIGTST 587
RYVI TST
Sbjct: 90 NSRYVIATST 99
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 58.0 bits (134), Expect = 2e-07
Identities = 30/58 (51%), Positives = 31/58 (53%)
Frame = +3
Query: 411 RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 584
R L PGTV ILLAGR GKR TGPF N PLRR+ RYVI TS
Sbjct: 36 RSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRRVNARYVIATS 93
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 57.6 bits (133), Expect = 2e-07
Identities = 27/61 (44%), Positives = 34/61 (55%)
Frame = +3
Query: 405 RTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 584
+ R +L PG VCILLAG + GKR TGP+A N P+RR+ Y+I TS
Sbjct: 34 KLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGVPVRRVNPAYIIATS 93
Query: 585 T 587
T
Sbjct: 94 T 94
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 54.8 bits (126), Expect = 1e-06
Identities = 45/148 (30%), Positives = 63/148 (42%)
Frame = +3
Query: 144 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 323
RN L G R+S +Y +K Y V V+K + G+KNGGT V L
Sbjct: 49 RNPILVRGTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKNGGTGVVKL 106
Query: 324 KSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 503
+ K + + + +F KH + N TP TV I++ G+H +R
Sbjct: 107 QKMKMYL---GSCKAMAKSPAF-KH-EKAVCNSTPETVLIIITGQH--RRVVFLKQLSRG 159
Query: 504 XXXFTGPFAFNACPLRRIPQRYVIGTST 587
TGP A N L R Q+ V+ TST
Sbjct: 160 FLLITGPLALNLVLLYRTHQKSVVITST 187
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 53.6 bits (123), Expect = 3e-06
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Frame = +3
Query: 270 VVKQIGGEKNGGTRTVLLKSRKSFYPTQDK--IRGRSHGKSFS---KHV--RRTRPNLTP 428
VV G +KN V+ +K P + K I + +G+ + K V R+ R ++
Sbjct: 17 VVPATGDKKNALKHYVIKGQKKILTPVRAKKTISKKHYGRKLASKKKFVVQRKMRSSIQV 76
Query: 429 GTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST 587
G V I+L G+H GKR GP+ N PL+R+ RY+I TST
Sbjct: 77 GKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRYLIVTST 129
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 50.4 bits (115), Expect = 3e-05
Identities = 26/60 (43%), Positives = 30/60 (50%)
Frame = +3
Query: 408 TRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST 587
T + PG V ILL+GR GKR TGPF N PL+R+ YVI TST
Sbjct: 54 TLRKIVPGQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKINGVPLKRVNSAYVIPTST 113
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 47.6 bits (108), Expect = 2e-04
Identities = 25/57 (43%), Positives = 29/57 (50%)
Frame = +3
Query: 417 NLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST 587
++TP TV I+L GRH GKR TGP A N PL R+ Q VI T T
Sbjct: 8 SITPQTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQSVVISTFT 64
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 47.6 bits (108), Expect = 2e-04
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 411 RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXF-TGPFAFNACPLRRIPQRYVIGTST 587
R + PG + I+LAGR G+R +GP +N P+RRI RYVI TST
Sbjct: 30 RKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATST 89
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 40.3 bits (90), Expect = 0.033
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = +3
Query: 408 TRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST 587
TRP+L GTV I++ G H GKR GP P+ I Q Y+I TST
Sbjct: 52 TRPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGP----VVPVNEISQDYLIATST 107
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 38.7 bits (86), Expect = 0.100
Identities = 23/63 (36%), Positives = 31/63 (49%)
Frame = +3
Query: 399 VRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIG 578
VRRT +L G V ++L G A +R GP + N PL RI +RY++
Sbjct: 22 VRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSINGIPLFRIDERYLLA 79
Query: 579 TST 587
TST
Sbjct: 80 TST 82
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 35.9 bits (79), Expect = 0.70
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 513 FTGPFAFNACPLRRIPQRYVIGTST 587
F GPF+ N P+RRI Q++V+ TST
Sbjct: 13 FLGPFSINGVPVRRIAQKFVLPTST 37
>UniRef50_Q9RH14 Cluster: Putative uncharacterized protein; n=2;
Zymomonas mobilis|Rep: Putative uncharacterized protein
- Zymomonas mobilis
Length = 390
Score = 34.7 bits (76), Expect = 1.6
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 362 DLVLSGVE*FPAFQQDCTSASILFTAYLLNHDGWFLG 252
+ LS + F A QD TSA I + YLL H WF G
Sbjct: 339 EYALSDIVYFGALLQDKTSADIAYYDYLLGHSRWFSG 375
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 34.7 bits (76), Expect = 1.6
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +3
Query: 408 TRPNLTPGTVCILLAGRHAGKR 473
++P + PG VCI+L GRHAGK+
Sbjct: 2 SQPIIKPGLVCIVLQGRHAGKK 23
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 34.3 bits (75), Expect = 2.1
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +3
Query: 516 TGPFAFNACPLRRIPQRYVIGTST 587
TG F N PLRR+ Q YVI TST
Sbjct: 172 TGSFKINGVPLRRVNQAYVIATST 195
>UniRef50_Q4P7G8 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 815
Score = 34.3 bits (75), Expect = 2.1
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -1
Query: 242 FRVLLTHKLIYSLLV--VHPAFGETEYTVSEVIIPRFANFLLLDTAGCGCGGFLRHLGLW 69
FR+L+ + + + +H +F T +++ R ++ D GFLR LGLW
Sbjct: 176 FRILVPRRNSKEVFIFLLHTSFLVLR-TYLSMLVARLDGIIVRDLVSANGRGFLRGLGLW 234
Query: 68 WSHNIPTGYKKNLV 27
+ +IP+ Y +++
Sbjct: 235 FLLSIPSTYTNSMI 248
>UniRef50_Q5KNJ1 Cluster: ATP-binding cassette (ABC) transporter,
putative; n=2; Filobasidiella neoformans|Rep:
ATP-binding cassette (ABC) transporter, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 867
Score = 32.7 bits (71), Expect = 6.5
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 206 LLVVHPAFGETEYTVSEVIIPRFANFLLLDTAGCGCGGFLRHLGLWWSHNIPTGY 42
LL++H +F TV V++ R ++ D GFLR LG W+ +P+ Y
Sbjct: 159 LLLLH-SFFLVSRTVLSVMVARLDGKIVRDLVSANAVGFLRGLGWWFILAVPSTY 212
>UniRef50_Q1JVH7 Cluster: Putative uncharacterized protein; n=1;
Desulfuromonas acetoxidans DSM 684|Rep: Putative
uncharacterized protein - Desulfuromonas acetoxidans DSM
684
Length = 181
Score = 32.3 bits (70), Expect = 8.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 299 WRHSYSPAEKQEIILPHSGQDQGSFSWQE 385
W + PA +Q ++L +SG+D GS W +
Sbjct: 66 WAIQFDPAGRQYVVLSNSGEDAGSEDWTD 94
>UniRef50_A6VTI6 Cluster: Acyltransferase 3 precursor; n=1;
Marinomonas sp. MWYL1|Rep: Acyltransferase 3 precursor -
Marinomonas sp. MWYL1
Length = 337
Score = 32.3 bits (70), Expect = 8.6
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 266 GWFLGLFSFRVLLTHKLIYSLLVVHPAFGETEYTVSEVIIPRFANFLLL 120
G+FLG S+ + L+H ++ LL++ FG YT + V + F L L
Sbjct: 262 GFFLGDISYSIYLSHSIV--LLILFFFFGSYRYTDTSVFLVMFTLLLCL 308
>UniRef50_Q8T248 Cluster: Similar to Dictyostelium discoideum (Slime
mold). Homeobox-containing protein; n=2; Dictyostelium
discoideum|Rep: Similar to Dictyostelium discoideum
(Slime mold). Homeobox-containing protein - Dictyostelium
discoideum (Slime mold)
Length = 1723
Score = 32.3 bits (70), Expect = 8.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 139 NRGIMTSETVYSVSPKAGCTTRRLYISLWVRRTRKLKSPRNQPS 270
N G TSE + ++ + G T +++ + +R R SPR QP+
Sbjct: 1569 NNGKFTSEEICQIATELGLTDQQVRVFFQNKRARSRPSPRGQPT 1612
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,030,153
Number of Sequences: 1657284
Number of extensions: 12595378
Number of successful extensions: 33606
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 32398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33587
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 40658285374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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