Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J21
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    67   2e-12
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    28   0.88 
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    27   1.5  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   3.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.2  
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    25   8.2  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 44/106 (41%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
 Frame = +3

Query: 279 QIGGEKNGGTRTVLL--KSRKSFYPTQDKIRGRSHGKSFSKHVRRT--RPNLTPGTVCIL 446
           ++ G KNGG R VL   ++   +YP   +    +  K   K VR T  R +L PGTVCIL
Sbjct: 5   KVNGAKNGGERMVLPAGEAAAKYYPAYRE----NVPKKARKAVRPTKLRASLAPGTVCIL 60

Query: 447 LAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 584
           LAGR  GKR              TGP+  N  P+RR+  RYVI TS
Sbjct: 61  LAGRFRGKR-VVVLSQLEDTLVVTGPYKVNGVPIRRVNHRYVIATS 105


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 157 SETVYSVSPKAGCTTRRLYISLWVRRTRKLKSPRNQP 267
           SET  S S K+G T+RR   S    R +KLK    +P
Sbjct: 2   SETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRP 38


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
 Frame = +3

Query: 309 RTVLLKSRKSFYPTQDKIRGR----SHGKSFSKHVRRTRPNLTP 428
           RT+L +  K FYP      GR     H    SK  R+ R   TP
Sbjct: 102 RTILPEDYKKFYPNAKTHMGRPQKIPHTVGLSKSTRKERKQFTP 145


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 478 CSLECCRVVCYSSLDLL 528
           CSLE   +VCYSSL +L
Sbjct: 764 CSLEVGPIVCYSSLKVL 780


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 336 SFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 473
           +FY      R  SH  S S     ++P LT  +  +L +  H  +R
Sbjct: 422 AFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYER 467


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 532 KAKGPVKSSRPLGNTPTSTTR 470
           KAK P+KSS+   N P S  R
Sbjct: 3   KAKSPIKSSKKSVNQPKSVLR 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,110
Number of Sequences: 5004
Number of extensions: 50361
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)