Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J21
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 69 3e-12
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 64 8e-11
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969... 30 1.6
07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331 29 2.7
05_05_0385 + 24566916-24567503,24568609-24568824,24568916-245692... 28 4.8
05_03_0269 + 11333823-11334639,11334714-11334775 27 8.4
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 27 8.4
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 68.9 bits (161), Expect = 3e-12
Identities = 45/103 (43%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Frame = +3
Query: 294 KNGGTRTVLLK----SRKSFYPTQD-KIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGR 458
KNGGT K + FYP D K R S K+ +R T +TPGTV ILLAGR
Sbjct: 31 KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKANPTKLRST---ITPGTVLILLAGR 87
Query: 459 HAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST 587
+ GKR TGPF N P+RR+ Q YVI TST
Sbjct: 88 YMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATST 130
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 64.1 bits (149), Expect = 8e-11
Identities = 43/148 (29%), Positives = 60/148 (40%), Gaps = 4/148 (2%)
Frame = +3
Query: 156 LGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLLKSRK 335
L G+ + S+S YH++ ++ + K V +
Sbjct: 7 LSQGIKKASRSHTYHRRGLWA-IKAKHGGAFPKAEKPAAAAAAAAPKFYPADDVKPRQPS 65
Query: 336 SFYPTQDKIRGRSHGK----SFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 503
+ P K+R S S + + R ++TPGTV ILLAGR GKR
Sbjct: 66 TRKPNPTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSG 125
Query: 504 XXXFTGPFAFNACPLRRIPQRYVIGTST 587
TGPF N P+RR+ Q YVI TST
Sbjct: 126 LLLVTGPFKINGVPIRRVNQPYVIATST 153
>03_05_0412 +
23993452-23994068,23996249-23996350,23996799-23996994,
23997075-23997259,23997394-23997498,23997625-23997722,
23997832-23998067,23998314-23998382,23999768-23999833,
24000513-24000611,24000688-24000750
Length = 611
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 565 RCGILRRGHALKAKGPVKSSRPLGNTPTSTT 473
RCG+ ++GH A GP + P ++ +TT
Sbjct: 23 RCGLPKKGHVCAAGGPAPTPSPSSSSGAATT 53
>07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331
Length = 599
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 520 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLGLVLRTCLL 389
P ++ P+ +TP+ T + CLPA+R T R +LR L+
Sbjct: 258 PTWTTSPILSTPSHTWQRSLCLPASRSFTPRKSRRDQLLRLALV 301
>05_05_0385 +
24566916-24567503,24568609-24568824,24568916-24569241,
24569906-24570338,24570769-24571281
Length = 691
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 2 GSPGCRNSARGFSCTRLEYYGSTTAQGGGE 91
G P C +S +C YYG+ A GG+
Sbjct: 294 GLPACASSTAAVACVDPLYYGAAVASVGGD 323
>05_03_0269 + 11333823-11334639,11334714-11334775
Length = 292
Score = 27.5 bits (58), Expect = 8.4
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Frame = -1
Query: 314 CTSASILFTAYLLNHDGWFLGLFSFRVLLTHKLIY---SLLVVHPAFGETEYTVSEVI-I 147
C S + + + HDG F L S VLL H + LL+ PA + + +
Sbjct: 23 CASGRDAWPLHHVRHDGVFCRLCSSCVLLYHPAAFCSACLLLFPPASASASASAATAVQE 82
Query: 146 PRFANFLLL--DTAGC-GCGGFLRH 81
PR L TA C CG F+ H
Sbjct: 83 PRLDPILSPPGPTAACSSCGLFVAH 107
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 520 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLG 413
P+KS+ P GN TTRL + A R+ TV + LG
Sbjct: 440 PLKSNHPKGNMILVTTRLLSL--AQRIGTVKPIELG 473
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,885,552
Number of Sequences: 37544
Number of extensions: 378493
Number of successful extensions: 1013
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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