Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J21
         (587 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               37   0.011
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      32   0.40 
SB_3668| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.2  
SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013)                    29   2.8  
SB_59148| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)                     28   4.9  
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.9  
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)          28   4.9  
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 16/22 (72%), Positives = 16/22 (72%)
 Frame = +3

Query: 522 PFAFNACPLRRIPQRYVIGTST 587
           PF  N  PLRRIPQ YVI TST
Sbjct: 2   PFKINGVPLRRIPQSYVIATST 23


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 463 LASVSCSLECC--RVVCYSSLDLLLSTRVPCAGFR 561
           +A  SC + CC  RVVCYS   +  S RV C   R
Sbjct: 162 VACCSCRVACCSCRVVCYSCRVVCYSCRVACCSCR 196



 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 475 SCSLECC--RVVCYSSLDLLLSTRVPCAGFR 561
           SC + CC  RVVCYS   +  S RV C   R
Sbjct: 124 SCRIACCSCRVVCYSCRVVFCSCRVACCSCR 154



 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 475 SCSLECC--RVVCYSSLDLLLSTRVPCAGFR 561
           SC + CC  RVVCYS   +  S RV C   R
Sbjct: 187 SCRVACCSCRVVCYSCRVVFCSCRVACCSCR 217



 Score = 30.7 bits (66), Expect = 0.92
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 436 CAFCWRADTLASVSCSLEC--CRVVCYSSLDLLLSTRVPCAGFRSA 567
           C   + +  +A  SC + C  CRVVCYS      S RV C   R A
Sbjct: 202 CRVVFCSCRVACCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCRVA 247



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +1

Query: 475 SCSLECC--RVVCYSSLDLLLSTRVPCAGFR 561
           SC + CC  RVVCYS      S RV C   R
Sbjct: 145 SCRVACCSCRVVCYSCRVACCSCRVACCSCR 175



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 463 LASVSCSLEC--CRVVCYSSLDLLLSTRVPCAGFR 561
           +A  SC + C  CRVVCYS      S RV C   R
Sbjct: 169 VACCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCR 203



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +1

Query: 475 SCSLECC--RVVCYSSLDLLLSTRVPCAGFRSA 567
           SC + CC  RVVCYS      S RV C   R A
Sbjct: 229 SCRVACCSCRVVCYSCRVACCSCRVVCYSCRVA 261


>SB_3668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -1

Query: 263 WFLGLFSFRVLLTHKLIYSL-LVVHPAFGETEYTVSEVIIPRFANFLL-LDTAGCGCGGF 90
           W+  + S  ++ T  LI++  L+    F  +   VSE ++PR+  F +   T G G G F
Sbjct: 359 WYRFIHSVWIVFT--LIFTAGLLAGAVFANSFVIVSETVLPRYKEFAMGFATIGMGAGTF 416

Query: 89  L 87
           L
Sbjct: 417 L 417


>SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013)
          Length = 340

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 532 KAKGPVKSSRPLGNTPTSTTRLPACLPANRMHTVP 428
           K+  P KS++P  + PT+ T LP   P  R+ ++P
Sbjct: 202 KSTKPTKSTKPTESKPTAPTSLPDQRPNCRLPSMP 236


>SB_59148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 421 SLPAQCAFCWRADTLASVSCSLECCRVVC 507
           S+  QC   W A    S+S +++ C+ VC
Sbjct: 127 SVEKQCVVRWLASVRTSISTAVDVCKAVC 155


>SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)
          Length = 1222

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 452 GQTRWQ-ACRARWSVAEWSATLHWTFCFQRVSPAQDSAALC 571
           G+ RW+ A +  W  + W   + +  C QRV    D  ALC
Sbjct: 178 GEMRWKLALKRNWLYSNWKCVVCYRNCSQRVDSHFD-VALC 217


>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3889

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 532  KAKGPVKSSRPLGNTPTSTTRLPACLPANRMHTVPG 425
            + K PV +SR L N PT  T     +   + H +PG
Sbjct: 1009 RIKTPVPTSRLLLNVPTQNTAKSIIIQTYKKHALPG 1044


>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
          Length = 1248

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
 Frame = -1

Query: 263 WFLGLF---SFRVLLTHKLIYSLLVV 195
           WF+ L+   S R+LLTHK++Y++  V
Sbjct: 796 WFMNLYLQVSTRILLTHKVLYTVTSV 821


>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 367 VVLMARVSVNMCVGRDLTSL-PAQCAFCWRADTLASVSCSLECCRVVCYSSLDLLLSTRV 543
           V+  +RV + +C  R    L P++         + SVSC    C V+C S + ++L    
Sbjct: 83  VLCPSRVCIVLCPSRVCIVLCPSRVCIVLCPSRVVSVSCPYRVCIVLCPSCVCIVLCPSC 142

Query: 544 PC 549
            C
Sbjct: 143 VC 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,051,821
Number of Sequences: 59808
Number of extensions: 418626
Number of successful extensions: 1280
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)