Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J21
         (587 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    73   1e-13
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    73   1e-13
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    70   1e-12
At5g60060.1 68418.m07531 F-box family protein various predicted ...    29   3.0  
At5g44290.1 68418.m05421 protein kinase family protein contains ...    29   3.0  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    28   5.3  
At4g14730.1 68417.m02265 transmembrane protein-related low simil...    28   5.3  
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof...    27   7.0  
At5g62910.1 68418.m07894 expressed protein predicted proteins, A...    27   9.3  
At3g55160.1 68416.m06126 expressed protein                             27   9.3  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 49/148 (33%), Positives = 69/148 (46%)
 Frame = +3

Query: 144 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 323
           RN DL  GV ++S+S+MYHK+ ++                + V   +             
Sbjct: 12  RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPV------------- 58

Query: 324 KSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 503
           +    FYP +D ++     +  +K  +  R ++TPGTV I+LAGR  GKR          
Sbjct: 59  EKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116

Query: 504 XXXFTGPFAFNACPLRRIPQRYVIGTST 587
               TGPF  N  PLRR+ Q YVIGTST
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTST 144


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 49/148 (33%), Positives = 69/148 (46%)
 Frame = +3

Query: 144 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 323
           RN DL  GV ++S+S+MYHK+ ++                + V   +             
Sbjct: 12  RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPV------------- 58

Query: 324 KSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 503
           +    FYP +D ++     +  +K  +  R ++TPGTV I+LAGR  GKR          
Sbjct: 59  EKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116

Query: 504 XXXFTGPFAFNACPLRRIPQRYVIGTST 587
               TGPF  N  PLRR+ Q YVIGTST
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTST 144


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 49/148 (33%), Positives = 67/148 (45%)
 Frame = +3

Query: 144 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 323
           RN DL  GV ++S+S+MYHK+ ++                  V   +  EK         
Sbjct: 12  RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPV--EKPA------- 62

Query: 324 KSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 503
                FYP +D  +   + +       + + ++TPGTV I+LAGR  GKR          
Sbjct: 63  ----KFYPAEDVKKPLVNRRK--PKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116

Query: 504 XXXFTGPFAFNACPLRRIPQRYVIGTST 587
               TGPF  N  PLRR+ Q YVIGTST
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTST 144


>At5g60060.1 68418.m07531 F-box family protein various predicted
           proteins, Arabidopsis thaliana ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 374

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 24/95 (25%), Positives = 40/95 (42%)
 Frame = +1

Query: 154 TSETVYSVSPKAGCTTRRLYISLWVRRTRKLKSPRNQPSWLSK*AVKRMEALVQSC*KAG 333
           +S+T++ +  ++ C T RL + L  +  R  K P+  P W S  +      L QS     
Sbjct: 30  SSDTIHLLCLRSVCATWRLSLPLSNKNNRLSKFPKYLPFWSSSSSSSGFFTLKQS--NVY 87

Query: 334 NHSTPLRTRSGVVLMARVSVNMCVGRDLTSLPAQC 438
               PL  R+ +V +   +  +    DL S    C
Sbjct: 88  KLEAPLNPRTCLVKLQETTPGIMRVLDLFSNDRIC 122


>At5g44290.1 68418.m05421 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 644

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 550 RRGHALKAKGPVKSSRPLGNTPTSTTRLPACLPAN 446
           RR H  K   PVK++ P  +T      L +C+P N
Sbjct: 468 RRSHERKLIPPVKANNPSLSTAVENPYLRSCVPGN 502


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 480 ARHACQRVCPPTECTLCRE 424
           ARHAC+R C   EC  C E
Sbjct: 411 ARHACRRRCCDGECPPCSE 429


>At4g14730.1 68417.m02265 transmembrane protein-related low
           similarity to transmembrane protein OTMP [Ovis aries]
           GI:9965379
          Length = 235

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = -1

Query: 293 FTAYLLNHDGWFLGLFSFRVLLTHKLIYSLLVVHPAFGETEYTVSEVIIPRFANFLLLDT 114
           F A    HD  FLG F F  LL   +   L + HP    +    S +    F  +++ DT
Sbjct: 140 FWAVKRGHDFSFLGPFLFGALLIILVFTLLQIFHPLGKLSSMIFSGIASIVFCGYIIFDT 199


>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 712

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 414 VSSYAHVY*NSCHENDP*SCPEWGRMI 334
           +  +A V  +SC+END  SC  W  +I
Sbjct: 345 LKQFAQVLKSSCNENDTLSCTLWDSLI 371


>At5g62910.1 68418.m07894 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 327

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 415 LTSLPAQCAFCWRADTLASVSCSLECCRVVCYSSLDLLLSTRVPC-AGFR 561
           L +L  Q +F       +SV+    C   +CY  LDL  S  +PC  GFR
Sbjct: 227 LPNLAKQLSFPELDKRFSSVAIPSSC--PICYEDLDLTDSNFLPCPCGFR 274


>At3g55160.1 68416.m06126 expressed protein
          Length = 2149

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = +1

Query: 430 AQCAFCWR-----ADTLASVSCSLECCRVVC-YSSLDLLLSTR 540
           AQC FCW      AD ++ +  + + C  +C +SSL  L   R
Sbjct: 279 AQCIFCWSSVVRLADIVSKIPFAGDICSEICSFSSLSRLCLIR 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,687,799
Number of Sequences: 28952
Number of extensions: 281386
Number of successful extensions: 735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)