Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J20
         (513 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   3.7  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   4.9  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    21   6.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.4  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -1

Query: 273 GSHWNK*GRSFSQPQISNET 214
           G+HW K   SF++ +++N++
Sbjct: 119 GAHWMKESISFAKVKLTNKS 138


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -1

Query: 273 GSHWNK*GRSFSQPQISN--ETPKGR 202
           GSHW     SFS+ +++N    P+G+
Sbjct: 111 GSHWMNQDISFSRVKLTNTCSPPQGQ 136


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 300 AFQAKYAPDGSH 265
           A +AKY PDG++
Sbjct: 105 ALEAKYDPDGTY 116


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 273 GSHWNK*GRSFSQPQISNETPKGRTPP 193
           G++ ++ G    QP I  +  +G+ PP
Sbjct: 195 GANMHQQGPPHQQPPIQQQPNQGQQPP 221


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 273 GSHWNK*GRSFSQPQISNETPKGRTPP 193
           G++ ++ G    QP I  +  +G+ PP
Sbjct: 197 GANMHQQGPPHQQPPIQQQPNQGQQPP 223


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,143
Number of Sequences: 336
Number of extensions: 3329
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12258909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)