Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J20
(513 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0) 89 2e-18
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35) 75 3e-14
SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 6e-10
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17) 52 2e-07
SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 5e-04
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.026
SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.10
SB_40390| Best HMM Match : BON (HMM E-Value=0.68) 31 0.74
SB_59068| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26) 30 0.97
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 2.2
SB_22569| Best HMM Match : NAF (HMM E-Value=6.2) 29 2.2
SB_16120| Best HMM Match : efhand (HMM E-Value=0.0059) 29 2.2
SB_38811| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069) 29 3.0
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 29 3.0
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30) 29 3.0
SB_14695| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_36010| Best HMM Match : Remorin_C (HMM E-Value=6.1) 28 3.9
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_54622| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 28 5.2
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_58418| Best HMM Match : DUF1110 (HMM E-Value=3.7) 28 5.2
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_14403| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_21938| Best HMM Match : Big_2 (HMM E-Value=0.69) 27 6.9
SB_20180| Best HMM Match : Aldedh (HMM E-Value=5.3e-08) 27 6.9
SB_3427| Best HMM Match : Homeobox (HMM E-Value=4e-24) 27 6.9
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_44329| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 215
Score = 89.0 bits (211), Expect = 2e-18
Identities = 42/102 (41%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Frame = +2
Query: 11 KVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVATVMQEYTQ 190
K+ + H+ M ++G+ D R+LV +AR Q + L +P+ + + +AT+ Q YTQ
Sbjct: 63 KICTLDDHVLMAFAGLTADARILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYTQ 122
Query: 191 SGGVRPFGVSLLICGWEND-RPYLFQCDPSGAYFAWKATAMG 313
S G RPFG+S LI G++ D P L+Q DPSG Y AWK G
Sbjct: 123 SNGRRPFGISTLIVGFDFDGTPRLYQTDPSGTYHAWKVVQSG 164
>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
Length = 224
Score = 75.4 bits (177), Expect = 3e-14
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
Frame = +2
Query: 65 DYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEN 244
D R V +AR A + + IP L +R+A + Q YTQ+ +RP G +++ G +
Sbjct: 64 DSRSQVQRARYEAANWKYKFGYEIPVDMLCKRIADISQVYTQNAEMRPLGCGMILIGIDE 123
Query: 245 DR-PYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTED--LELDDAVHTAILTLKEG 415
++ P L++ DP+G + +KA ++G +FLEK+ + ++ V TAI L
Sbjct: 124 EKGPQLYKTDPAGYFCGFKACSVGVKQTEANSFLEKKVKKKHAWTFNETVETAISCLSSV 183
Query: 416 FEGQMTADNIEVGI--CDASGFRRLEPAHVKDYL 511
+EVG+ D FR+L A + +L
Sbjct: 184 LSADFKPSELEVGVVSMDNPRFRKLTEAEIDTHL 217
>SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 60.9 bits (141), Expect = 6e-10
Identities = 23/30 (76%), Positives = 28/30 (93%)
Frame = +2
Query: 197 GVRPFGVSLLICGWENDRPYLFQCDPSGAY 286
GVRPFGVSLL+ GW++DRPYLFQCDPS ++
Sbjct: 2 GVRPFGVSLLVAGWDDDRPYLFQCDPSESF 31
Score = 58.0 bits (134), Expect = 4e-09
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +2
Query: 410 EGFEGQMTADNIEVGICDASGFRRLEPAHVKDYL 511
E FEGQMT DNIE+G+C+ +GFRRL P VKDYL
Sbjct: 29 ESFEGQMTEDNIELGVCNENGFRRLTPPEVKDYL 62
>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
Length = 308
Score = 52.4 bits (120), Expect = 2e-07
Identities = 26/69 (37%), Positives = 37/69 (53%)
Frame = +2
Query: 23 ITGHIGMVYSGMGPDYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVATVMQEYTQSGGV 202
I HIGM +G+ D R +V AR+ A Y +Y PIP LV RV+ + +T +
Sbjct: 199 IDTHIGMAIAGLIADSRQIVATAREEAANYRSVYGSPIPLKYLVNRVSGFIHAFTLYSAM 258
Query: 203 RPFGVSLLI 229
RPFG + +
Sbjct: 259 RPFGCRIYV 267
>SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +2
Query: 251 PYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTE---DLELDDAVHTAILTLKEGF- 418
P++FQ PS YF KA A+G + +T+LEK Y + D E ++ + + L+E
Sbjct: 4 PHIFQTCPSANYFDCKAMAIGARSQSARTYLEK-YLDAFGDCEPEELIKHGLKALRETLP 62
Query: 419 -EGQMTADNIEVGI 457
E ++T N +G+
Sbjct: 63 NEQELTTKNCSIGL 76
>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 35.5 bits (78), Expect = 0.026
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 65 DYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFG 214
D R V +AR A + + IP L +RVA + Q YTQ+ +RP G
Sbjct: 27 DSRSQVQRARYEAANWKYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLG 76
>SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 33.5 bits (73), Expect = 0.10
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = -2
Query: 494 EPVPVSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQHHPVPDPRYTSF 345
+P P G H P Y T P A G P GQH P P Y +
Sbjct: 603 QPSPPHGGHPHHPPPTGYPGGYPGTHTAPPAGGYPTGQHPPPPPAGYPGY 652
>SB_40390| Best HMM Match : BON (HMM E-Value=0.68)
Length = 561
Score = 30.7 bits (66), Expect = 0.74
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 157 ASGDRHARIYSIRRRPSFRRFVTDLRLGERSPLLIPVRSVGRVLRLEG 300
A G + + S +RR SF + TD G+ SPL S R+LRL G
Sbjct: 194 AIGHESSSVMSSKRRRSFLDYDTDPTSGQTSPL--SPSSASRILRLPG 239
>SB_59068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 30.7 bits (66), Expect = 0.74
Identities = 19/42 (45%), Positives = 19/42 (45%)
Frame = -2
Query: 491 PVPVSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQHHPVP 366
P P SG L H YP PSS P S SG C HP P
Sbjct: 93 PPPPSGRCLAHPYPFSQKAPSSTTSPPLSPSGR-C-LAHPYP 132
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/50 (36%), Positives = 20/50 (40%)
Frame = -2
Query: 506 SPSREPVPVSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQHHPVPDPR 357
S + P+ SG L H YP PSS PP C HP P R
Sbjct: 114 STTSPPLSPSGRCLAHPYPFSQKAPSSTTSPPPPG----CYLAHPYPFSR 159
>SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26)
Length = 550
Score = 30.3 bits (65), Expect = 0.97
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 48 TPAWALIIVCSSHKPGKWPNSTT 116
TP +I+ + +PGKWPN+TT
Sbjct: 260 TPQGQIILTQETLEPGKWPNNTT 282
>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/61 (19%), Positives = 27/61 (44%)
Frame = +2
Query: 224 LICGWENDRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILT 403
+ICGW+ P L+ D G + + ++G ++ Y D+ ++A + +
Sbjct: 154 MICGWDKKGPGLYYVDSDGTRLSNQMFSVGSGSTYAYGVMDSGYKYDMSPEEAYDLGVRS 213
Query: 404 L 406
+
Sbjct: 214 I 214
>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1981
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -3
Query: 469 ACVTNTHFDIIRRHLTLEPLLQRQDRRVDSIIQFQILGIPLFQER 335
AC TNT F+ + LTL+P + R++S + F LG+ L + +
Sbjct: 1660 ACFTNTSFNYLGNSLTLQPNNRVDLSRMESALSF--LGLDLTENQ 1702
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = -2
Query: 494 EPVPVSGTRLRHKYPLRYYPPSSDP----RTP--PSASGSPCGQHHPVP 366
EP+P + T + K ++Y PP P ++P PS +G+P + HP P
Sbjct: 394 EPIP-NATPIMAKDAVKYEPPQQQPQQQRQSPPQPSPTGAPPQRPHPPP 441
>SB_22569| Best HMM Match : NAF (HMM E-Value=6.2)
Length = 307
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 73 SARHTSQENGPTVLPDVPRADTHSAV 150
+++HT+QENG LPD+ +T+ AV
Sbjct: 108 NSKHTAQENGLLNLPDITLRNTNLAV 133
>SB_16120| Best HMM Match : efhand (HMM E-Value=0.0059)
Length = 399
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -2
Query: 485 PVSG--TRLRHKYPLRYYPPSSDPRTPPSASGSPCGQHHPVPDP 360
PV G T RH Y YY SS +P ++ P G HH P P
Sbjct: 258 PVDGIITGHRHTYHYHYYTSSSSLPSPQTSP--PGGWHHYRPSP 299
>SB_38811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 452 PLRYYPPSSDPRTPPSASGSPCG-QHHPVPDPRYTSFPG 339
P Y PP+++P P G+P G Q P +P + FPG
Sbjct: 480 PQAYCPPTNNPMFRP-FPGNPQGYQQPPTNNPMFRPFPG 517
>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = -2
Query: 503 PSREPVPVSGTRLRH---KYPLRYYPPSSDPRTPPSASGSPCGQHHPVPDPRYTSFP 342
P P P +G + H K L PP + PP P +H P P +S P
Sbjct: 700 PLPPPPPPTGIDIPHSPSKDDLPLPPPPEEVSLPPPDESPPSSKHPPTVSPSSSSAP 756
>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
Length = 135
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 437 PPSSDPRTPPSASGSPCGQHHPVP 366
PP+S P P SG P Q HP P
Sbjct: 90 PPTSQPYGAPPTSGYPGYQQHPPP 113
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 296 KATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEGQMTADNIE 448
+A G F+ KT +DLE DA+H +L + G E + + D +E
Sbjct: 1178 QADPTGLEFHTEKTDENLLKEDDLETKDALHKDVLNEERGIEKENSFDWLE 1228
>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = -2
Query: 506 SPSREPVPVSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQH 378
SPS PVS R + P R+ PR P P +H
Sbjct: 449 SPSPAKTPVSMRTAREESPYRWLTEKKSPRPEPQGCDYPDNEH 491
>SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)
Length = 508
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -2
Query: 503 PSREPVPV-SGTRLRHKYPLRYYPP 432
P R P+ + TR R+ YP RYYPP
Sbjct: 470 PYRYYPPIDTTTRYRYYYPYRYYPP 494
>SB_14695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = -2
Query: 503 PSREPVPVSGTRLRHKYPLRYY---PPSSDPRTPPSASGSPCGQHHPVP 366
P P+PV ++ YP +Y PP P PPS SP ++ +P
Sbjct: 128 PYPGPLPVLSPQVYRGYPFQYPGTPPPPMYPAFPPSFPSSPPPEYPGLP 176
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -2
Query: 446 RYYPPSSDPRT-PPSASGSPCGQ-HHPVPDPRYTSFP 342
R YP DP PS G P P DPRY S+P
Sbjct: 571 RRYPARPDPMGYSPSEMGVPSSPLPRPASDPRYGSYP 607
>SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 28.3 bits (60), Expect = 3.9
Identities = 22/78 (28%), Positives = 31/78 (39%)
Frame = +2
Query: 230 CGWENDRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLK 409
C W P + P A+ AW +A G L KR D +T L +
Sbjct: 459 CCWPTATPSI----PDPAFDAWTDSAAEGTPITGIVALRKRKPSG-SCADTFNTIALQTR 513
Query: 410 EGFEGQMTADNIEVGICD 463
EG E Q+ +++ G CD
Sbjct: 514 EGTERQVKTCSLKDGRCD 531
>SB_36010| Best HMM Match : Remorin_C (HMM E-Value=6.1)
Length = 183
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 512 RDSPSREPVPVSGTRLRHKYPLRYYPPSSDPRTPP 408
R S SR+ +P SG R R P PP DP P
Sbjct: 149 RRSASRDRIPSSGGRRRSPSPSGPRPPRFDPTAYP 183
>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2371
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +1
Query: 19 NDYWPYRNGVLRHGP*LSSARHTSQENGPTVLPDVPRADTHSAVGPASGDRHARIYSIRR 198
ND++ G L G SA + E L V R + G +GD+ ++YS+ +
Sbjct: 2070 NDFYSASAGRLYDGSSWCSATSSQAEYLQVDLGRVTRVTGIATQGSPTGDKWVKLYSVEQ 2129
Query: 199 RPSFRRFVTDLRLGERS 249
F T+ GE S
Sbjct: 2130 SDD-GHFFTEYTAGESS 2145
>SB_54622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -2
Query: 497 REPVPVSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQHHPVPDPRYTSFP 342
R PV V RL + R +S+P S PCGQ+ P PR+ P
Sbjct: 42 RHPVHVQALRLSRGFSGRAVFSASNPSF--FLSSFPCGQYAPGVAPRFLQGP 91
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -2
Query: 497 REPVPVSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQHHP 372
R +P + + K PL YPP + P+T P P P
Sbjct: 639 RPSLPGTPPETKTKPPLAPYPPKTSPKTTPKPHIPPAPSRPP 680
>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 765
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -2
Query: 446 RYYPPSSDPRTPPSASGSPCGQHHPV--PDPRY 354
RYYP +P++ SG+P +H+P P PRY
Sbjct: 182 RYYP-YGNPQSRYYPSGNPQSRHYPSGNPQPRY 213
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = -2
Query: 506 SPSREPVPVSGTR---LRHKYPLRYYPPS--SDPRTPPSASGSPCGQHHPVPDPRYT 351
SPSR+PVP T+ +R +P PS +DP+ PS + PV +P T
Sbjct: 1917 SPSRDPVPTRFTKSVPVRTSFPTWNPVPSRTADPKISPSTRKRTLSK-RPVNEPAVT 1972
>SB_58418| Best HMM Match : DUF1110 (HMM E-Value=3.7)
Length = 474
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 452 PLRYYPPSSDPRTPPSASGSPCGQHHPVPDPR 357
PLR Y +D T +AS P H PDPR
Sbjct: 433 PLRCYTKDADASTILAASKQPTQLHPDGPDPR 464
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -2
Query: 509 DSPSREPVPVSGTRLRHKYPLRY-YPPSSDPRTPPSASGSPCGQHHP-VPDPRYTSFP 342
D PS EP+P +R P PP +P PPS+ SP + P P ++ S P
Sbjct: 924 DIPSPEPLPEVDI-MRSPTPTPPPSPPPKEPTPPPSSKPSPVKEIKPKKPIEKFISRP 980
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -2
Query: 503 PSREPVPVSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQHHPVPDPR 357
P R+P P + P + PP S+P PP P PVP PR
Sbjct: 1043 PPRKPSPPPSA-VPIPPPRKPSPPPSEPAPPPRQPPPP-STSQPVPPPR 1089
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 437 PPSSDPRTPPSASGSPCGQHHPVPDPRYTSFP 342
PPS+ P PP SP P+P PR S P
Sbjct: 1035 PPSAQP-LPPPRKPSPPPSAVPIPPPRKPSPP 1065
>SB_14403| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -2
Query: 497 REPVPVSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQHHPVPDPRYTSFP 342
R PV V RL + R +S+P S PCGQ+ P PR+ P
Sbjct: 42 RHPVHVQALRLSRGFSGRAVFSASNPSF--FLSSFPCGQYAPGVAPRFLQGP 91
>SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 437 PPSSDPRTPPSASGSPCGQHHPVPDP 360
PPS+ TP S +PC P P P
Sbjct: 357 PPSTPAPTPAPLSSTPCAPFAPPPPP 382
>SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 70 SSARHTSQENGPTVLPDVPRADTHSAVGPASG 165
SS+ +S +GPT +P P + GP SG
Sbjct: 68 SSSTSSSTTHGPTPVPATPSSPPRPTPGPGSG 99
>SB_21938| Best HMM Match : Big_2 (HMM E-Value=0.69)
Length = 651
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 215 VSLLICGWENDRPYLFQCDPSGAYFAWKA 301
VSL GW ++ P+ F G F WK+
Sbjct: 95 VSLFATGWMDESPFAFANAVPGLVFNWKS 123
>SB_20180| Best HMM Match : Aldedh (HMM E-Value=5.3e-08)
Length = 266
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +1
Query: 82 HTSQENGPTVLPDVPRADTHSAVGPASGDRHARIYSIRRRPSFR 213
+T + GP VLP V R D SAV S R +SIR +FR
Sbjct: 201 NTKCQRGPDVLPFVGRKD--SAVSTLSVYDALRTFSIRTLVAFR 242
>SB_3427| Best HMM Match : Homeobox (HMM E-Value=4e-24)
Length = 245
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = -2
Query: 503 PSREPVPVSGTRLRHKYPLRYY---PPSSDPRTPPSASGSPCGQHHPVP 366
P P PV ++ YP +Y PP P PPS SP ++ +P
Sbjct: 165 PFPGPPPVLSPQVYRGYPFQYPGTPPPPMYPAFPPSFPSSPPPEYPGLP 213
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -2
Query: 506 SPSREPVPVSGTRLR-HKYPLRYYPPSSDPRTPPSASGSPCGQHHPVPDP 360
+PS P+S R H P PS +P PS+ SP +P DP
Sbjct: 462 NPSISTSPISNPSPRPHPSPHPSSNPSPNPSPNPSSDPSPNPSSNPSSDP 511
>SB_44329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 494 EPVPVSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQHHPV 369
EP + G K+ YPP+ P PP A +P G + V
Sbjct: 39 EPYAIRGGSRISKWGGGEYPPNPPPLYPPLAIRTPLGWEYAV 80
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,516,824
Number of Sequences: 59808
Number of extensions: 429138
Number of successful extensions: 1468
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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