Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J19
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom...    26   2.5  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    26   2.5  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    24   7.7  

>SPBC577.03c |||GCN5-related N-acetyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 297 PWTRTHVLKYYNYIRTIIETELT 229
           P+ + HVLKY+N+++     ELT
Sbjct: 18  PYQKCHVLKYHNWMKNEELQELT 40


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 285 THVLKYYNYIRTIIETELTYCARIDK 208
           TH++KY +Y+  ++   L Y  R+++
Sbjct: 278 THIIKYDDYLVHLVHETLQYSVRLEQ 303


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 298 ALDTHARVKILQLHQDNNRNRTHILRAHRQTYFLNME 188
           ALD+ + V + +   + +R+RT I+ AHR +   N +
Sbjct: 597 ALDSKSEVLVQKALDNASRSRTTIVIAHRLSTIRNAD 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,775
Number of Sequences: 5004
Number of extensions: 26949
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)