Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J19
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0084 - 10477880-10477897,10477940-10478002,10479523-104795...    29   1.4  
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186...    29   1.8  
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771...    28   3.2  
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406...    27   5.6  
04_03_0643 + 18328807-18331969,18332560-18332627                       27   5.6  
06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764           27   7.3  

>10_06_0084 -
           10477880-10477897,10477940-10478002,10479523-10479575,
           10479774-10480589,10480889-10480998,10481338-10482068
          Length = 596

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +2

Query: 227 YVSSVSIIVLM*L*YFNTCVRVQGSKYTDRFVVRYGTATSMY 352
           Y+SS+ II L    + +T VR+ G   TD+ VV Y    S Y
Sbjct: 486 YLSSILIIKLACAGHSSTAVRIFGLLTTDKNVVTYTALMSAY 527


>04_03_0286 +
           13915705-13915984,13916478-13917062,13918188-13918661,
           13918963-13920208,13920282-13920297
          Length = 866

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +1

Query: 94  ACVCQDNTCTDGYY---LAYVCVCVG 162
           AC+ + + C DGY+   L Y C+C G
Sbjct: 247 ACISEHSKCMDGYFAPILGYNCLCDG 272


>03_05_0586 -
           25875703-25876332,25876426-25876713,25877064-25877194,
           25877299-25877812
          Length = 520

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -2

Query: 135 VVPVGTRIVLTHARTNTLQLVVF 67
           VVP G  IV+T +R +TLQ+V F
Sbjct: 404 VVPSGHPIVVTSSRDSTLQIVCF 426


>12_01_0513 +
           4059586-4059620,4060155-4060365,4060470-4060724,
           4060801-4060865,4061120-4061194,4061440-4061575,
           4061661-4061753,4061838-4061983,4062074-4062174,
           4062259-4062434,4063823-4063900,4063991-4064199,
           4064286-4064378,4064888-4064971,4065405-4065506,
           4065591-4065678,4065756-4065809,4065869-4066075,
           4066970-4067026,4067171-4067225,4067737-4067813,
           4067941-4068007,4068383-4068444,4068541-4068603,
           4068702-4068830
          Length = 905

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 4/20 (20%)
 Frame = -3

Query: 188 TVSMHA----HNTPTHTHTY 141
           TV++H     HN+PTHTH+Y
Sbjct: 679 TVNVHMTQTPHNSPTHTHSY 698


>04_03_0643 + 18328807-18331969,18332560-18332627
          Length = 1076

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +3

Query: 261  NCNILTRACVSKARNILTGLLF---VTVQRHLCTVL*ITYRFYM 383
            NC  LT  CVS+A NI T  +F    TV    C  L     F+M
Sbjct: 884  NCGSLTSICVSEASNIHTVGVFSSLSTVTISFCNALLSLDEFFM 927


>06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764
          Length = 973

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 376 NRYVIYNTVHRCRCTVTNNKPVSIFRAL 293
           ++Y +YN  H  +C++ ++  +SI R L
Sbjct: 544 SKYSVYNFTHMLKCSMPDDLNLSIIRVL 571


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,364,775
Number of Sequences: 37544
Number of extensions: 151825
Number of successful extensions: 314
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)