Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J19
         (403 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49058| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.27 
SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.46 
SB_2943| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.9  
SB_35903| Best HMM Match : Carn_acyltransf (HMM E-Value=1.9e-13)       28   3.3  
SB_24207| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_45993| Best HMM Match : TEP1_N (HMM E-Value=0.48)                   27   5.7  
SB_9716| Best HMM Match : HMG_box (HMM E-Value=0.0041)                 26   10.0 
SB_6256| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   10.0 

>SB_49058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 400 LYYIIYM*NRYVIYNTVHRCRCTVTNNKPVSIFRALDTHARVKILQL 260
           LYY++Y+    V+   + RC CT +    V ++  L  ++ V  +Q+
Sbjct: 257 LYYVLYLQGAVVLRPILTRCSCTTSYTYKVQLYFVLKQNSSVVCIQM 303



 Score = 29.9 bits (64), Expect = 0.81
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 400 LYYIIYM*NRYVIYNTVHRCRCTVTNNKPVSIFRAL 293
           LYY++Y+    V+ + + RC CT++    V ++  L
Sbjct: 9   LYYVLYLQGAVVLCHILTRCSCTMSYTYKVQLYYVL 44



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 400 LYYIIYM*NRYVIYNTVHRCRCTVTNNKPVSIFRAL 293
           LYY++Y+    V+   + RC CT++    V ++  L
Sbjct: 40  LYYVLYLQGAVVLCPILTRCSCTMSYTYKVQLYYVL 75



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 400 LYYIIYM*NRYVIYNTVHRCRCTVTNNKPVSIFRAL 293
           LYY++Y+    V+   + RC CT++    V ++  L
Sbjct: 71  LYYVLYLQGAVVLCPILTRCSCTMSYTYKVQLYYVL 106



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 400 LYYIIYM*NRYVIYNTVHRCRCTVTNNKPVSIFRAL 293
           LYY++Y+    V+   + RC CT++    V ++  L
Sbjct: 226 LYYVLYLQGTVVLCPILTRCSCTMSYTYKVQLYYVL 261



 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 400 LYYIIYM*NRYVIYNTVHRCRCTVTNNKPVSIFRAL 293
           LYY++Y+    V+   + RC CT +    V ++  L
Sbjct: 102 LYYVLYLQGAVVLRPILTRCSCTTSYTYKVQLYYVL 137



 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 400 LYYIIYM*NRYVIYNTVHRCRCTVTNNKPVSIFRAL 293
           LYY++Y+    V+   + RC CT +    V ++  L
Sbjct: 133 LYYVLYLQGAVVLRPILTRCSCTTSYTYKVQLYYVL 168



 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 400 LYYIIYM*NRYVIYNTVHRCRCTVTNNKPVSIFRAL 293
           LYY++Y+    V+   + RC CT +    V ++  L
Sbjct: 195 LYYVMYLQGAVVLCPILTRCSCTTSYTYKVQLYYVL 230



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 400 LYYIIYM*NRYVIYNTVHRCRCTVTNNKPVSIF 302
           LYY++Y+    V+   + RC CT +    V ++
Sbjct: 164 LYYVLYLQGAVVLCPILTRCSCTTSYTYKVQLY 196


>SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = -3

Query: 302 SSLGHARTC*-NITITSGQ**KQNSHIARA*TNLFFKYGTV-SMHAHNTPTHTHTYAK*Y 129
           SS  HA +   ++T +       ++H+  +  ++   Y  V S HAH T +H H  +   
Sbjct: 346 SSYAHATSSYAHVTSSHAHVTSSHAHVTTSYAHVTSSYAHVTSSHAHVTSSHAHVTSS-- 403

Query: 128 PSVHVLS*HTHAQTLY 81
              HV S +TH  T Y
Sbjct: 404 -HAHVTSSYTHVTTSY 418


>SB_2943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 224 ARA*TNLFFKYGTVSMHAH-NTPTHTHTYAK*YPSVHVLS*HTHAQT 87
           A A T+   K  TV+  AH  T  HTH Y   + S      HTHA+T
Sbjct: 11  AHARTHTNTKVVTVARVAHARTHAHTHKYQGGHGSARRTRTHTHART 57


>SB_35903| Best HMM Match : Carn_acyltransf (HMM E-Value=1.9e-13)
          Length = 507

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 310 SIFRALD-THARVKILQLHQDNNRNRTHILRAHRQTYFLN 194
           SIF A+D TH    I   H  N  + TH L A   T++LN
Sbjct: 360 SIFNAIDDTHYLNAIDDTHYLNATDDTHYLNAIDDTHYLN 399


>SB_24207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 85  SVCACVCQDNTCTDGYYLAYV-CVCVGVLCACIDTVPYLKNKFVYARAI 228
           S+C    QD   T   +L  +  VC  V  A ID   Y+K  F + R +
Sbjct: 229 SICRPNIQDIKITHTLFLTVIGFVCCWVPIAVIDITDYVKGAFTHPREV 277


>SB_45993| Best HMM Match : TEP1_N (HMM E-Value=0.48)
          Length = 369

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 166 LCA-CIDTVPYLKNKFVYARAICEFCFYYCPDVIV 267
           LCA C+D V +   ++ YA +     F  C DV++
Sbjct: 67  LCAQCVDVVMHTVRRYRYAHSAWMSLFAQCVDVVI 101


>SB_9716| Best HMM Match : HMG_box (HMM E-Value=0.0041)
          Length = 169

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 325 NNKPVSIFRALDTHARVKILQLHQDNNRNRTHILRAHRQTY 203
           N +P++ F       R++I Q H   + ++ H    HR  Y
Sbjct: 31  NKRPMNAFMLFAKRYRLEITQAHPGKDNSQHHHHHHHRHRY 71


>SB_6256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 127 GYYLAYVCVCVGVLCACI-DTVPY--LKNKFVYARAICEFCFYYCPDVIVIF*HVR 285
           G Y+ YVCV   V+  C+   V Y  ++   VY R + ++  Y C    V++  VR
Sbjct: 180 GQYVVYVCVGQYVVYVCVRQYVVYVCVRQYVVYVR-VGQYVVYVCVRQYVVYVCVR 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,868,472
Number of Sequences: 59808
Number of extensions: 223185
Number of successful extensions: 564
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)