Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J19
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72512-8|CAH04717.1|  583|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z72512-7|CAA96668.3|  568|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U56963-1|AAB38120.1|  161|Caenorhabditis elegans Hypothetical pr...    26   8.8  
U51994-3|AAM69099.1|   78|Caenorhabditis elegans Hypothetical pr...    26   8.8  

>Z72512-8|CAH04717.1|  583|Caenorhabditis elegans Hypothetical
           protein R07B5.8b protein.
          Length = 583

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
 Frame = +1

Query: 226 ICEFCFYYCPDVIVIF*HVRAC-----PRLEIY 309
           ICEFCF+Y     ++  H + C     P LEIY
Sbjct: 198 ICEFCFFYARSDEIMQNHAKKCMLRAPPGLEIY 230


>Z72512-7|CAA96668.3|  568|Caenorhabditis elegans Hypothetical
           protein R07B5.8a protein.
          Length = 568

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
 Frame = +1

Query: 226 ICEFCFYYCPDVIVIF*HVRAC-----PRLEIY 309
           ICEFCF+Y     ++  H + C     P LEIY
Sbjct: 243 ICEFCFFYARSDEIMQNHAKKCMLRAPPGLEIY 275


>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
           protein C09H6.1b protein.
          Length = 1309

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 352 VHRC-RCTVTNNKPVSIFRALDTHARVKI 269
           ++RC +CT T N+PVS+   L  HA V +
Sbjct: 736 LYRCVQCTYTTNRPVSLKDHLKQHAIVNM 764


>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
           protein C09H6.1a protein.
          Length = 1311

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 352 VHRC-RCTVTNNKPVSIFRALDTHARVKI 269
           ++RC +CT T N+PVS+   L  HA V +
Sbjct: 736 LYRCVQCTYTTNRPVSLKDHLKQHAIVNM 764


>U56963-1|AAB38120.1|  161|Caenorhabditis elegans Hypothetical
           protein T13A10.2 protein.
          Length = 161

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 91  CACVCQDNTCTDGYYLAYVCVCVGVLC-ACI 180
           C  VC D+  + G     VC C+   C ACI
Sbjct: 96  CCAVCHDSYASRGPKKPKVCSCLHTYCGACI 126


>U51994-3|AAM69099.1|   78|Caenorhabditis elegans Hypothetical
           protein R03G5.7 protein.
          Length = 78

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 130 YYLAYVCVCVGVLCACIDTVPYLKNKFVYARAICEFCFY 246
           YY A++   +G    CI T P + +++ Y  +I  F F+
Sbjct: 33  YYFAWIVQLMGFALFCISTYPQI-HRWSYLVSIFYFSFF 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,884,747
Number of Sequences: 27780
Number of extensions: 160936
Number of successful extensions: 427
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)