Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J19
         (403 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66630.1 68414.m07571 seven in absentia (SINA) family protein...    30   0.66 
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ...    27   3.5  
At1g74260.1 68414.m08600 AIR synthase-related family protein con...    27   4.7  
At2g04430.1 68415.m00447 MutT/nudix family protein similar to SP...    26   8.2  

>At1g66630.1 68414.m07571 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 303

 Score = 29.9 bits (64), Expect = 0.66
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +1

Query: 139 AYVCVCVGVLCACIDTVPYLKNKFVYARAICEFCFYYCPD 258
           A V  C      C + +PY          +CEF   YCP+
Sbjct: 102 AVVVSCPNAKYGCTEKIPYDNESESAHERVCEFTLCYCPE 141


>At5g48320.1 68418.m05969 DC1 domain-containing protein contains Pfam
            profile PF03107: DC1 domain
          Length = 977

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +1

Query: 175  CIDTVPYLKNKFVYARAICEFCFYYCPDVIV 267
            C   V  L N    +R IC FC   CP  IV
Sbjct: 923  CSSKVSVLPNNHHMSRPICSFCKKRCPHNIV 953


>At1g74260.1 68414.m08600 AIR synthase-related family protein contains
            Pfam profiles: PF00586 AIR synthase related protein,
            N-terminal domain, PF02769 AIR synthase related protein,
            C-terminal domain
          Length = 1387

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 127  GYYLAYVCVCVGVLCACIDTVPYLKNKFVYARAI 228
            G  LA V   +G  C  +D VPYLKN F   +A+
Sbjct: 925  GSALAQVFGQIGNDCPDLDDVPYLKNVFDGVQAL 958


>At2g04430.1 68415.m00447 MutT/nudix family protein similar to
           SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
           {Homo sapiens}; contains Pfam profile PF00293: NUDIX
           domain
          Length = 283

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 275 NTCVRVQGSKYTDRFVVRYGTATSMYCIINHVPVL 379
           N C++    KYT   +       S+YC ++H  +L
Sbjct: 236 NICLKRSREKYTGFVLTTNSAKKSLYCSVDHANLL 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,961,829
Number of Sequences: 28952
Number of extensions: 129780
Number of successful extensions: 298
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)