Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J17
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    35   0.006
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   0.93 
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   1.6  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    25   3.8  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   5.0  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   6.6  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    25   6.6  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.7  
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    24   8.7  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    24   8.7  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    24   8.7  

>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 34.7 bits (76), Expect = 0.006
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
 Frame = +2

Query: 215 KCDVTTSD-LEAAYTAVIADCGYIDVVVNCAGIMNDRPNVYLKEIA--VNVTALVTSSF- 382
           + DV+ +D +E A   VI   G IDV++N AG+ +D P   L   +   +V+ ++  ++ 
Sbjct: 51  QADVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVLRGNYL 110

Query: 383 -RAYDLMRKDRDGKGGTI 433
            + Y +    + GKGG+I
Sbjct: 111 TQRYVIPHMAKQGKGGSI 128


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
 Frame = +2

Query: 116 AKHVAALDLDVNNGKALEKEMIDKYGSKRITFYKCDVTTSDLEAA--YTAVIADCGYIDV 289
           + H    D   N  K LE   ID+  S      + D  T   EA   ++ +   CG+++ 
Sbjct: 678 SNHTIDCDSLQNVIKMLESS-IDEISSASYDKDELDKETPSFEAVMIFSQISFLCGFLNC 736

Query: 290 VVNCAGIMNDRPN--VYLKEIAVNVTALVTSSFRAYD 394
            +   GI N  PN  V  K +   V + V S+  +YD
Sbjct: 737 FIQKKGIHNVTPNNLVIFKNLFPEVLSFVKSN-HSYD 772


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 231 VVTSHL*NVILFEPYLSIISFSNALPLFT 145
           VVTS L  ++LF PY++I S +  L L T
Sbjct: 109 VVTSLL--ILLFSPYIAITSMARLLTLIT 135


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 319 IVHYTGTVNNNIDISTVSDNSGISGLQVTCR 227
           ++  TGT  + + + TV+   G+S LQ+  R
Sbjct: 60  VISSTGTDEHGLKVQTVAQTEGVSPLQLCDR 90


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 201 E*HFTNAT*RQVTWRPLIPLLSLTVDISMLLLTVP 305
           E H+ N   R V W  +I +L   V + +L  TVP
Sbjct: 394 EVHYVNDLERGVVWEEVIIMLPPHVTLILLSATVP 428


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +2

Query: 149 NNGKALEKEMIDKYGSKRITFYKCDVTTSDLEAAYTAVIADCGYI 283
           N  K  E  + D YGSK             L+  +  V+ADC Y+
Sbjct: 35  NLSKWNENRLYD-YGSKSTMSLPVSSLFPALQTLWIGVVADCSYV 78


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -3

Query: 239 SHLSLRR-ICK-MLFFLNHIYRSSPFLMLYHYLHLNLEPLRA*HRLAKMPRL 90
           S+L L+R IC+  L   +H Y    FL++ H L +N +     ++L + P L
Sbjct: 230 SYLELQRNICQGNLSCWDHHYSDDVFLLIRHCLEVNSDLRPTTYQLLRSPIL 281


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +2

Query: 101 FLQDGAKHVAALDLDVNNGKALEKEMIDKYGSKRITFYKCDVTTSDLEAAYT 256
           F+   ++H   LD D+N         I K G      Y C  TT  LEA  T
Sbjct: 370 FVYSSSRHNTLLDEDINCNTVYATAGIGKSGCLVTMRYGCSSTTL-LEAILT 420


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 254 TAVIADCGYIDVVVNCAGIMNDR 322
           T V   CG  D+V +C G  N+R
Sbjct: 277 TMVEQSCGIADLVTSCLGGRNNR 299


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 322 PIVHYTGTVNNNIDI-STVSDNSGIS 248
           P+VHY GT  N I+  S  S   GIS
Sbjct: 283 PLVHYKGTRKNQIESRSWSSRQDGIS 308


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1325

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 131  PLRA*HRLAKMPRLYRHQYLPLRRSLKSLYLE 36
            PLR    LA +P    ++ LP+  + + LYL+
Sbjct: 1052 PLRNLESLADLPEAESNEKLPMVNTFERLYLQ 1083


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,609,972
Number of Sequences: 5004
Number of extensions: 30767
Number of successful extensions: 85
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)