SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J17
         (433 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05)             51   5e-07
SB_5928| Best HMM Match : No HMM Matches (HMM E-Value=.)               45   3e-05
SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1)                    38   0.005
SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.043
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)              33   0.10 
SB_39030| Best HMM Match : adh_short (HMM E-Value=5.5e-34)             30   0.93 
SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)                       29   2.2  
SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)                  28   2.8  
SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)                  28   3.8  
SB_55834| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_42378| Best HMM Match : MgtC (HMM E-Value=1.8)                      27   5.0  
SB_15247| Best HMM Match : Hormone_5 (HMM E-Value=0.98)                27   6.6  
SB_4493| Best HMM Match : RrnaAD (HMM E-Value=0.014)                   27   6.6  
SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024)                 27   6.6  

>SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05)
          Length = 201

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
 Frame = +2

Query: 35  VQDKVILVTXXXXXXXXXXVEAFLQDGAKHVAALDLDVNNGKALEKEMIDKYGSKRITFY 214
           ++  V +VT           +A L    K V  LD++   G    K + + Y   R+ F 
Sbjct: 3   IEGTVAIVTGGVQGIGLAISKALLDRDGK-VCMLDINEKTGNETLKLLSENYSKHRVLFI 61

Query: 215 KCDVTTS-DLEAAYTAVIADCGYIDVVVNCAGIM---ND--RPNVYLKEIAVNVTALVTS 376
           KCDVT+   +EAA+       G +D++ N AGI    ND  R   +   I +NV  ++  
Sbjct: 62  KCDVTSQPQMEAAFQRTKDVFGRLDILCNNAGIAVRENDLLRSGAWKTIIDINVKGVILG 121

Query: 377 SFRAYDLMR-KDRDGKGGTI 433
           +    D M      G GGTI
Sbjct: 122 TLLGLDHMGVSGAKGHGGTI 141


>SB_5928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
 Frame = +2

Query: 125 VAALDLDVNNGKALEKEMIDKYGSKRITFYKCDVTTSD-LEAAYTAVIADCGYIDVVVNC 301
           V  +DL    G  +   + +K+GS  ++F  CDV+  D L+ A+   ++  G++D+V N 
Sbjct: 24  VVLVDLQKKAGNDVTCLLQNKHGSGSVSFISCDVSNQDQLKDAFWETVSTHGHLDIVFNN 83

Query: 302 AGIMNDRPNVYLKEIAVNVTALVTSSFRAYDLMRKD 409
           AGI+++    + K + VN+   +   +  +   R++
Sbjct: 84  AGILDEER--WSKTLDVNLLNSIEPRYNEHHYNRRE 117


>SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1)
          Length = 256

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = +2

Query: 125 VAALDLDVNNGKALEKEMIDKYGSKRITFYKCDVTTSD-LEAAYTAVIADCGYIDVVVNC 301
           V  +D+ +N+G   ++ +  ++G     F +CDV   + L  A    + D   +D++ N 
Sbjct: 66  VRIIDICINSGLKAQENLEAQFGPGTAEFIECDVCNREKLSEAIRQTVKDHSKLDILCNN 125

Query: 302 AGIMNDRPNVYLKEIAVNVTALVTSSFRAY 391
           AGI++++   + K + +N+ +     +  Y
Sbjct: 126 AGIIDEKN--WPKSVELNLFSQFIEGYSGY 153


>SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 34.3 bits (75), Expect = 0.043
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
 Frame = +2

Query: 44  KVILVTXXXXXXXXXXVEAFLQDGAKHVAALDLDVNNGKALEKEMIDKYGSKRITFYKCD 223
           +V +VT          VE   ++GA  VA LD++   G+ +E ++  +    ++ FY  D
Sbjct: 25  RVAIVTGGASGIGKATVERLAREGAS-VAILDINDELGQQVETDL--RSSGNKVKFYHVD 81

Query: 224 VTTSDLEA-AYTAVIADCG-YIDVVVNCAGIMNDR 322
           V   D+ A     V AD G  + ++VN A     +
Sbjct: 82  VANKDMCAHVVGCVAADHGSAVHILVNNAAYFGSK 116


>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
          Length = 717

 Score = 33.1 bits (72), Expect = 0.10
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
 Frame = +2

Query: 44  KVILVTXXXXXXXXXXVEAFLQDGAKHVAALDL------DVNNGKALEK--EMIDKYGSK 199
           +V+LVT            AF + GA  V   DL      +  +G+A +K  + I   G K
Sbjct: 11  RVVLVTGAGNGLGRQYALAFAERGAS-VVVNDLGGDTKGEGKSGRAADKVVQEIRAKGGK 69

Query: 200 RITFYKCDVTTSDLEAAYTAVIADCGYIDVVVNCAGIMNDRPNVYLKEI 346
            +  Y   V   D +   TA+ A  G IDVVVN AGI+ D+  + + E+
Sbjct: 70  AVADYN-SVEQGD-QVVETAIKA-FGRIDVVVNNAGILRDKSILRMSEL 115


>SB_39030| Best HMM Match : adh_short (HMM E-Value=5.5e-34)
          Length = 527

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
 Frame = +2

Query: 44  KVILVTXXXXXXXXXXVEAFLQDGAKH--VAALDLDVNNGKALEKEMIDKYGSKRITFYK 217
           KV ++T               +DG K   V A   +++   +LE    +  G   +   +
Sbjct: 4   KVAVITGCSSGIGLATASILAKDGEKRFRVYATMRNLDKKGSLESACQNALGDT-LFIRE 62

Query: 218 CDVTTSD-LEAAYTAVIADCGYIDVVVNCAGI 310
            DV++ D +E A  A+  + G ID++VN AGI
Sbjct: 63  LDVSSDDSVEEALNAIYEEEGRIDILVNNAGI 94


>SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)
          Length = 603

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
 Frame = +2

Query: 35  VQDKVILVTXXXXXXXXXXVEAFLQDGAKHVAALDLDVNNGKALEKEMIDKYGSKRITFY 214
           ++ +V +VT           +A  + G K VA           L  E+I   G   I+  
Sbjct: 102 LEGQVAIVTGASSGIGAAVAKALAEAGVK-VALAARREERLTQLRDEIIAN-GDVAISV- 158

Query: 215 KCDVTTSD-LEAAYTAVIADCGYIDVVVNCAGIM 313
           K DVT  + +E+      +  G +D++V+CAG+M
Sbjct: 159 KTDVTIKEQMESLVKRTDSTLGPVDILVSCAGVM 192


>SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)
          Length = 827

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 122 HVAALDLDVNNGKALEKEMIDKYGSKRITFYKCDVTTSDLE 244
           HV AL ++  NG+ + ++ +   GSK +T Y C    +D E
Sbjct: 464 HVQALPINERNGQHILRDSVTSPGSKVLTMY-CKKQDNDKE 503


>SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)
          Length = 492

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 95  EAFLQDGAKHVAALDLDVNNGKALEKEMIDKYGSKRITF--YKCDVTTSDLE 244
           E+F+   AK    L       + + +E+ +KYG   +T+  +K +VT +DLE
Sbjct: 50  ESFIWGNAKEFQRLQKHGKRKEEILRELSEKYGPVFVTWEIHKPEVTITDLE 101


>SB_55834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 233 LSLRRICKMLFFLNHIYRSSPFLMLYHYLHLNLEPLRA*HRLAKMPRLYRHQYL 72
           +S   +  M   ++H Y ++ F+ML H+    +  + + H L  M  +  H YL
Sbjct: 17  MSNHYLTTMFVMMSHHYLTTMFVMLSHHYLTTMFVMMSHHYLTTMFVIMSHHYL 70



 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 233 LSLRRICKMLFFLNHIYRSSPFLMLYHYLHLNLEPLRA*HRLAKMPRLYRHQYL 72
           +S   +  M   L+H Y ++ F+M+ H+    +  + + H L  M  +  H YL
Sbjct: 29  MSHHYLTTMFVMLSHHYLTTMFVMMSHHYLTTMFVIMSHHYLTTMFVIMAHHYL 82



 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 233 LSLRRICKMLFFLNHIYRSSPFLMLYHYLHLNLEPLRA*HRLAKMPRLYRHQYL 72
           LS   +  M   ++H Y ++ F+++ H+    +  + A H L  M  +  H YL
Sbjct: 41  LSHHYLTTMFVMMSHHYLTTMFVIMSHHYLTTMFVIMAHHYLTTMFVIMSHHYL 94


>SB_42378| Best HMM Match : MgtC (HMM E-Value=1.8)
          Length = 173

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 116 AKHVAALDLDVNNGKALEKEMIDKYGSKRI 205
           A+ V    LD+N G+A +K  IDK G++ +
Sbjct: 134 ARTVNKKPLDINGGRARQKAEIDKCGNETV 163


>SB_15247| Best HMM Match : Hormone_5 (HMM E-Value=0.98)
          Length = 997

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 301 CRYNER*A-KCLPKGDSC*RYSISYE 375
           C YN++ A KCLP+G+   R S  YE
Sbjct: 51  CSYNKKEAFKCLPQGNGRIRISTCYE 76


>SB_4493| Best HMM Match : RrnaAD (HMM E-Value=0.014)
          Length = 192

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +2

Query: 98  AFLQDGAKHVAALDLDVNNGKALEKEMIDKYGSKRITFYKCDVTTSDLEAAY 253
           + L  GA+HVAA+++D     +L  ++++     R+T +  D+   ++ +A+
Sbjct: 64  SILNAGARHVAAVEIDRRFLPSL--QLLEDAAKGRMTLHHADIMKFNIPSAF 113


>SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024)
          Length = 249

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 1/125 (0%)
 Frame = -2

Query: 384 LNELVTNAVTLTAISFR*TFGLSFIIPAQLTTTSIYPQSAITA-V*AASKSLVVTSHL*N 208
           ++  ++   T T IS   T   + II    TTTS    + ITA +   + ++ +T+ +  
Sbjct: 109 ISTTISTTTTTTTISTTTTTITAVIISTTTTTTSTANTTTITATITTTTTTITITATITT 168

Query: 207 VILFEPYLSIISFSNALPLFTSKSRAATCLAPSCKNASTXXXXXXXXXPVTKITLS*TLN 28
           +          + S   P  T  +  +T +  +    +T          +T   +  T+N
Sbjct: 169 ITTTITATITTTISTTTPFIT--ATISTTITTTITTTTTITTTTTTIYTITTTIIIITIN 226

Query: 27  MTAFK 13
           ++  K
Sbjct: 227 ISQSK 231


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,059,297
Number of Sequences: 59808
Number of extensions: 229610
Number of successful extensions: 587
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -