Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J17
(433 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68341-1|CAA92764.1| 258|Caenorhabditis elegans Hypothetical pr... 40 0.001
U41749-1|AAB52488.2| 248|Caenorhabditis elegans Dehydrogenases,... 40 0.001
AF067950-1|AAG24154.1| 361|Caenorhabditis elegans Serpentine re... 30 0.62
Z50756-2|CAA90638.1| 473|Caenorhabditis elegans Hypothetical pr... 29 1.1
AF068717-3|AAC17762.2| 361|Caenorhabditis elegans Serpentine re... 29 1.1
AC024214-5|AAF36077.2| 605|Caenorhabditis elegans Hypothetical ... 29 1.1
AC024214-4|AAM97985.2| 603|Caenorhabditis elegans Hypothetical ... 29 1.1
AC024214-3|AAU05554.1| 577|Caenorhabditis elegans Hypothetical ... 29 1.1
U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein. 28 2.5
U53139-13|AAK18939.1| 334|Caenorhabditis elegans Hypothetical p... 28 2.5
AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain fa... 28 2.5
AB275892-1|BAF34315.1| 334|Caenorhabditis elegans D-aspartate o... 28 2.5
Z81581-10|CAN86611.1| 309|Caenorhabditis elegans Hypothetical p... 28 3.3
AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein ... 28 3.3
U28943-10|AAA68362.1| 329|Caenorhabditis elegans Dehydrogenases... 27 4.4
AF022973-4|AAC25798.1| 314|Caenorhabditis elegans Temporarily a... 27 5.8
AF077529-5|AAN60534.1| 756|Caenorhabditis elegans Hypothetical ... 27 7.7
>Z68341-1|CAA92764.1| 258|Caenorhabditis elegans Hypothetical
protein F01G4.2 protein.
Length = 258
Score = 39.5 bits (88), Expect = 0.001
Identities = 29/93 (31%), Positives = 44/93 (47%)
Frame = +2
Query: 32 SVQDKVILVTXXXXXXXXXXVEAFLQDGAKHVAALDLDVNNGKALEKEMIDKYGSKRITF 211
S + V LVT E + GA+ VA LDL + G + KE+ + +T
Sbjct: 6 STKGLVALVTGGASGLGKGAAEVLAKAGAQ-VAILDLPQSKGADVAKEIGGIFTPASVT- 63
Query: 212 YKCDVTTSDLEAAYTAVIADCGYIDVVVNCAGI 310
+ ++ AA+ V A+ G +D +VNCAGI
Sbjct: 64 -----SEEEVRAAFAKVQAEYGRLDALVNCAGI 91
>U41749-1|AAB52488.2| 248|Caenorhabditis elegans Dehydrogenases,
short chain protein25 protein.
Length = 248
Score = 39.5 bits (88), Expect = 0.001
Identities = 26/100 (26%), Positives = 45/100 (45%)
Frame = +2
Query: 44 KVILVTXXXXXXXXXXVEAFLQDGAKHVAALDLDVNNGKALEKEMIDKYGSKRITFYKCD 223
++ +VT + + GA+ V A DLD N A K + S+ + + CD
Sbjct: 8 RIAVVTGGASGIGKAISQTLAKHGARVVVA-DLDSGNAAATAKALP---ASQSHSSFACD 63
Query: 224 VTTSDLEAAYTAVIADCGYIDVVVNCAGIMNDRPNVYLKE 343
V+ +D + + G ++VNCAGI D + +K+
Sbjct: 64 VSNADSVKGLSEHVKSLGTPSILVNCAGITKDSTLLKMKQ 103
>AF067950-1|AAG24154.1| 361|Caenorhabditis elegans Serpentine
receptor, class w protein141 protein.
Length = 361
Score = 30.3 bits (65), Expect = 0.62
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -3
Query: 227 LRRICKMLFFLNHIYRSSPFLMLYHYLHLNLEPLRA 120
L+ + ++L+F H +S F+ L+H+L L +PLR+
Sbjct: 30 LKTVDRVLYFEPHFSAASIFINLFHFLILIRKPLRS 65
>Z50756-2|CAA90638.1| 473|Caenorhabditis elegans Hypothetical
protein T08D10.3 protein.
Length = 473
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 325 WPIVHYTGTVNNNIDISTVSDNSGISGLQVTCRYV 221
+P+ H+ T++NN + DNSGI Q+T Y+
Sbjct: 313 FPLTHFEVTMDNNTTFFILRDNSGIV-YQITLDYI 346
>AF068717-3|AAC17762.2| 361|Caenorhabditis elegans Serpentine
receptor, class w protein142 protein.
Length = 361
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -3
Query: 227 LRRICKMLFFLNHIYRSSPFLMLYHYLHLNLEPLRA 120
L+ + ++L+F H +S F+ L+H+L L +PLR+
Sbjct: 30 LKIVDRVLYFEPHFSAASIFINLFHFLILIRKPLRS 65
>AC024214-5|AAF36077.2| 605|Caenorhabditis elegans Hypothetical
protein Y77E11A.7a protein.
Length = 605
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -3
Query: 221 RICKMLFFLNHIY---RSSPFLMLYHYLHLNLEPLRA*HRLAKMPRLY 87
RICK + +L + R+SP L+ YH +L+ P+ L K P+LY
Sbjct: 273 RICKKVCWLESLVDNSRASPVLVQYHVNYLSDNPI----ELRKTPKLY 316
>AC024214-4|AAM97985.2| 603|Caenorhabditis elegans Hypothetical
protein Y77E11A.7b protein.
Length = 603
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -3
Query: 221 RICKMLFFLNHIY---RSSPFLMLYHYLHLNLEPLRA*HRLAKMPRLY 87
RICK + +L + R+SP L+ YH +L+ P+ L K P+LY
Sbjct: 271 RICKKVCWLESLVDNSRASPVLVQYHVNYLSDNPI----ELRKTPKLY 314
>AC024214-3|AAU05554.1| 577|Caenorhabditis elegans Hypothetical
protein Y77E11A.7c protein.
Length = 577
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -3
Query: 221 RICKMLFFLNHIY---RSSPFLMLYHYLHLNLEPLRA*HRLAKMPRLY 87
RICK + +L + R+SP L+ YH +L+ P+ L K P+LY
Sbjct: 245 RICKKVCWLESLVDNSRASPVLVQYHVNYLSDNPI----ELRKTPKLY 288
>U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein.
Length = 452
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +2
Query: 218 CDVTTSDLEAAYTAVIADCGYIDVVVNCAGIMNDRPNVYLKEIAVNVTALVTSSFRAYDL 397
C D +A + + + ++ +C I N RP+ LKE V +T L R +
Sbjct: 256 CGKKKKDKQATRVRTVLNENQLKILRDCYSI-NSRPDATLKERLVEMTGLSARVIRVWFQ 314
Query: 398 MRKDRDGK 421
++ +D K
Sbjct: 315 NKRCKDKK 322
>U53139-13|AAK18939.1| 334|Caenorhabditis elegans Hypothetical
protein F18E3.7a protein.
Length = 334
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 197 KRITFYKCDVTTSDLEAAYTAVIADCGYIDVVVNCAGI 310
++I F + +VT+ D +AD GY DV+VNCAG+
Sbjct: 157 QKIEFKQQEVTSLD-------AVADAGY-DVIVNCAGL 186
>AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain
family protein 7 protein.
Length = 452
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +2
Query: 218 CDVTTSDLEAAYTAVIADCGYIDVVVNCAGIMNDRPNVYLKEIAVNVTALVTSSFRAYDL 397
C D +A + + + ++ +C I N RP+ LKE V +T L R +
Sbjct: 256 CGKKKKDKQATRVRTVLNENQLKILRDCYSI-NSRPDATLKERLVEMTGLSARVIRVWFQ 314
Query: 398 MRKDRDGK 421
++ +D K
Sbjct: 315 NKRCKDKK 322
>AB275892-1|BAF34315.1| 334|Caenorhabditis elegans D-aspartate
oxidase protein.
Length = 334
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 197 KRITFYKCDVTTSDLEAAYTAVIADCGYIDVVVNCAGI 310
++I F + +VT+ D +AD GY DV+VNCAG+
Sbjct: 157 QKIEFKQQEVTSLD-------AVADAGY-DVIVNCAGL 186
>Z81581-10|CAN86611.1| 309|Caenorhabditis elegans Hypothetical
protein T02E1.5b protein.
Length = 309
Score = 27.9 bits (59), Expect = 3.3
Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Frame = +2
Query: 17 KAVMFSVQDKVILVTXXXXXXXXXXVEAFLQDGAKHVAALDLDVNNGKALEKEMIDKYGS 196
K ++ V + +L+T F + GA+ V D++ K KE+ + G
Sbjct: 33 KEIILKVSGQTVLITGSGSGLGRLMAFEFGKLGARLVL-WDINEQGNKETLKEL-EAMGV 90
Query: 197 KRITFYKCDVTT-SDLEAAYTAVIADCGYIDVVVNCAGIMNDR------PNVYLKEIAVN 355
+ Y D++ ++ V ++ G +D++VN AGI+ + + +K ++VN
Sbjct: 91 EAKA-YTVDLSEYKEINRTADLVKSEVGKVDILVNNAGIVTGKKLLQCPDELMVKTVSVN 149
Query: 356 VTAL 367
AL
Sbjct: 150 TNAL 153
>AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein
protein.
Length = 703
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/72 (22%), Positives = 31/72 (43%)
Frame = +2
Query: 164 LEKEMIDKYGSKRITFYKCDVTTSDLEAAYTAVIADCGYIDVVVNCAGIMNDRPNVYLKE 343
L +++++ Y K F K + + +TA IA C + A + N+ N +
Sbjct: 119 LLRDIVNYYNGKAPEFLKLTFDGTPSQTIFTAGIATCIAYGIARATASLFNELRNAVFAK 178
Query: 344 IAVNVTALVTSS 379
+A N ++ S
Sbjct: 179 VAQNSIRSISRS 190
>U28943-10|AAA68362.1| 329|Caenorhabditis elegans Dehydrogenases,
short chain protein7 protein.
Length = 329
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/63 (20%), Positives = 29/63 (46%)
Frame = +2
Query: 44 KVILVTXXXXXXXXXXVEAFLQDGAKHVAALDLDVNNGKALEKEMIDKYGSKRITFYKCD 223
K +VT + +GA HV L+ ++ + L+K+++++ I +CD
Sbjct: 29 KTFVVTGTTSGIGIETARSLSLNGA-HVVMLNRNLEESEKLKKKIVEEMNDAEIDIIECD 87
Query: 224 VTT 232
+ +
Sbjct: 88 LNS 90
>AF022973-4|AAC25798.1| 314|Caenorhabditis elegans Temporarily
assigned gene nameprotein 57 protein.
Length = 314
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 167 EKEMIDKYGSKRITFYKCDVTTSDLEAAYTAVIADCGYID--VVVNCAGIMNDRPNV 331
+K++++KY + + CD T E Y ++ +D +++N G+ D P V
Sbjct: 94 KKQILNKYSDIEVRYAICDFTRVSYE-DYKRLLHSLNEVDIGILINNVGMCFDNPEV 149
>AF077529-5|AAN60534.1| 756|Caenorhabditis elegans Hypothetical
protein C09E8.1b protein.
Length = 756
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 245 PPSHLSLRRICKMLFFLNHIYRSS--PFLMLYHYLHLN 138
PP + + CK+L FL R S PF++ + L LN
Sbjct: 712 PPLLIIMCNTCKLLIFLLEKIRRSEIPFMIFFQILSLN 749
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,814,170
Number of Sequences: 27780
Number of extensions: 170270
Number of successful extensions: 489
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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