Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J17
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   4.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 110 DGAKHVAALDLDVNNGKALEKEMIDKYGSKRITFYKCDVTT 232
           D  +H + LD+D      ++ E ID Y   +I+  K    T
Sbjct: 238 DENRHSSTLDIDHKMLTPIKSEPIDAYEMHQISKKKLSPAT 278


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 287 VVVNCAGIMNDRPNVYLKEIAVNV 358
           VVV  AGI+   P +Y   I ++V
Sbjct: 525 VVVGTAGIILQAPTLYDDRIPIDV 548


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +2

Query: 104 LQDGAKHVAALDLDVNNGKALEKEMIDKYGSKRITFYKCDVTTSD 238
           L+ G  HV   + ++ +GK +    + +  S   T Y+C +   D
Sbjct: 617 LKSGLYHVLRGNENIYSGKLISMRHLKEEVSSIETNYECGLRFED 661


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,383
Number of Sequences: 438
Number of extensions: 2313
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)