Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J17
(433 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51680.1 68416.m05667 short-chain dehydrogenase/reductase (SD... 47 5e-06
At1g24360.1 68414.m03072 3-oxoacyl-[acyl-carrier protein] reduct... 47 5e-06
At3g26770.1 68416.m03348 short-chain dehydrogenase/reductase (SD... 45 2e-05
At2g47130.1 68415.m05886 short-chain dehydrogenase/reductase (SD... 40 5e-04
At3g29260.1 68416.m03672 short-chain dehydrogenase/reductase (SD... 39 0.001
At2g47120.1 68415.m05885 short-chain dehydrogenase/reductase (SD... 38 0.003
At3g42960.1 68416.m04512 alcohol dehydrogenase (ATA1) identical ... 33 0.11
At2g19550.1 68415.m02284 esterase/lipase/thioesterase family pro... 29 1.0
At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4) i... 28 3.1
At3g15110.1 68416.m01911 expressed protein 27 4.1
At5g18500.1 68418.m02183 protein kinase family protein contains ... 27 5.5
At3g23860.1 68416.m02999 GTP-binding protein-related low similar... 27 5.5
At5g28850.2 68418.m03550 calcium-binding EF hand family protein ... 27 7.2
At5g28850.1 68418.m03549 calcium-binding EF hand family protein ... 27 7.2
At4g02630.1 68417.m00357 protein kinase family protein contains ... 27 7.2
At3g23175.1 68416.m02922 lesion inducing protein-related similar... 27 7.2
At3g43230.1 68416.m04563 zinc finger (FYVE type) family protein ... 26 9.6
At2g46840.1 68415.m05845 expressed protein ; expression supporte... 26 9.6
>At3g51680.1 68416.m05667 short-chain dehydrogenase/reductase (SDR)
family protein similar to short-chain alcohol
dehydrogenase GI:1877480 from [Tripsacum dactyloides]
Length = 303
Score = 47.2 bits (107), Expect = 5e-06
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Frame = +2
Query: 35 VQDKVILVTXXXXXXXXXXVEAFLQDGAKHVAALDLDVNNGKALEKEMIDKYGSKRITFY 214
++ KV ++T V F + GA V A D+D G +L K + S + F
Sbjct: 32 LEGKVAIITGGAHGIGKATVMLFARHGATVVIA-DVDNVAGSSLAKSLSSHKTSPMVAFI 90
Query: 215 KCDVTT-SDLEAAYTAVIADCGYIDVVVNCAGIMNDR 322
CDV+ +D+E +A G +D++ N AG++ D+
Sbjct: 91 SCDVSVEADVENLVNVTVARYGRLDILFNNAGVLGDQ 127
>At1g24360.1 68414.m03072 3-oxoacyl-[acyl-carrier protein]
reductase, chloroplast / 3-ketoacyl-acyl carrier protein
reductase identical to 3-oxoacyl-[acyl-carrier protein]
reductase SP:P33207 from [Arabidopsis thaliana]
Length = 319
Score = 47.2 bits (107), Expect = 5e-06
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 6/145 (4%)
Frame = +2
Query: 5 EASLKAVMFSVQDKVILVTXXXXXXXXXXVEAFLQDGAKHVAALDLDVNNGKALEKEMID 184
E S V+ V+ V+++T A + G K + + + K+ I+
Sbjct: 64 EQSPGEVVQKVESPVVVITGASRGIGKAIALALGKAGCKVLVNYARSAKEAEEVAKQ-IE 122
Query: 185 KYGSKRITFYKCDVTTSDLEAAYTAVIADCGYIDVVVNCAGIMNDRPNVYLKE------I 346
+YG + ITF +D++A + G IDVVVN AGI D + +K+ I
Sbjct: 123 EYGGQAITFGGDVSKATDVDAMMKTALDKWGTIDVVVNNAGITRDTLLIRMKQSQWDEVI 182
Query: 347 AVNVTALVTSSFRAYDLMRKDRDGK 421
A+N+T + + A +M K + G+
Sbjct: 183 ALNLTGVFLCTQAAVKIMMKKKRGR 207
>At3g26770.1 68416.m03348 short-chain dehydrogenase/reductase (SDR)
family protein similar to sex determination protein
tasselseed 2 SP:P50160 from [Zea mays]
Length = 306
Score = 45.2 bits (102), Expect = 2e-05
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +2
Query: 35 VQDKVILVTXXXXXXXXXXVEAFLQDGAKHVAALDLDVNNGKALEKEMIDKYGSKRITFY 214
++ KV L+T FL+ GA+ V A DLD G KE+ GS+ F
Sbjct: 41 LEGKVALITGGASGLGKATASEFLRHGARVVIA-DLDAETGTKTAKEL----GSE-AEFV 94
Query: 215 KCDVTT-SDLEAAYTAVIADCGYIDVVVNCAGIM 313
+CDVT +D+ A + G +DV+ N AGI+
Sbjct: 95 RCDVTVEADIAGAVEMTVERYGKLDVMYNNAGIV 128
>At2g47130.1 68415.m05886 short-chain dehydrogenase/reductase (SDR)
family protein similar to
3-beta-hydroxysteroiddehydrogenase GI:15983819 from
[Digitalis lanata]
Length = 257
Score = 40.3 bits (90), Expect = 5e-04
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Frame = +2
Query: 44 KVILVTXXXXXXXXXXVEAFLQDGAKHVAALDLDVNNGKALEKEMIDKYGSKRITFYKCD 223
K+ ++T V F GAK V +D G+ + + G + +FY+CD
Sbjct: 9 KIAIITGGASGIGAEAVRLFTDHGAK-VVIVDFQEELGQNVAVSV----GKDKASFYRCD 63
Query: 224 VTT-SDLEAAYTAVIADCGYIDVVVNCAGIMNDRPNVYL 337
VT ++E A + G +DV+ + AG+M ++P +L
Sbjct: 64 VTNEKEVENAVKFTVEKYGKLDVLFSNAGVM-EQPGSFL 101
>At3g29260.1 68416.m03672 short-chain dehydrogenase/reductase (SDR)
family protein similar to
3-beta-hydroxysteroiddehydrogenase GI:15983819 from
[Digitalis lanata]
Length = 259
Score = 39.1 bits (87), Expect = 0.001
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Frame = +2
Query: 44 KVILVTXXXXXXXXXXVEAFLQDGAKHVAALDLDVNNGKALEKEMIDKYGSKRITFYKCD 223
K++++T F GAK V +DL G+ + + G + +FY+CD
Sbjct: 9 KIVIITGGASGIGAEAARLFTDHGAK-VVIVDLQEELGQNVAVSI----GLDKASFYRCD 63
Query: 224 VT-TSDLEAAYTAVIADCGYIDVVVNCAGIMNDRPNV 331
+T +++E A + G +DV+ + AG+M ++
Sbjct: 64 ITDETEVENAVKFTVEKHGKLDVLFSNAGVMEPHGSI 100
>At2g47120.1 68415.m05885 short-chain dehydrogenase/reductase (SDR)
family protein similar to
3-beta-hydroxysteroiddehydrogenase GI:15983819 from
[Digitalis lanata]
Length = 258
Score = 37.9 bits (84), Expect = 0.003
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +2
Query: 35 VQDKVILVTXXXXXXXXXXVEAFLQDGAKHVAALDLDVNNGKALEKEMIDKYGSKRITFY 214
++ K++++T F GAK V +DV + L + + G + +FY
Sbjct: 6 LEGKIVIITGGASGIGADAARLFTDHGAKVVI---VDVQ--EELGQNVAVLIGKDKASFY 60
Query: 215 KCDVTT-SDLEAAYTAVIADCGYIDVVVNCAGIM 313
+CDVT +++E A + G +DV+ + AG++
Sbjct: 61 RCDVTNETEVEDAVKFTVEKHGKLDVLFSNAGVL 94
>At3g42960.1 68416.m04512 alcohol dehydrogenase (ATA1) identical to
alcohol dehydrogenase (ATA1) GI:2501781 from
[Arabidopsis thaliana]
Length = 272
Score = 32.7 bits (71), Expect = 0.11
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Frame = +2
Query: 41 DKVILVTXXXXXXXXXXVEAFLQDGAKHVAALDLDVNNGKALEKEMIDKYGSKRITFYKC 220
+KV ++T F ++GA +V D+ N G L E I + C
Sbjct: 10 EKVAIITGGARGIGAATARLFTENGA-YVIVADILENEG-ILVAESIGG------CYVHC 61
Query: 221 DVTT-SDLEAAYTAVIADCGYIDVVVNCAG-------IMNDRPNVYLKEIAVNVTALVTS 376
DV+ +D+EAA + G +DV+ N AG IM ++ K ++VNV ++
Sbjct: 62 DVSKEADVEAAVELAMRRKGRLDVMFNNAGMSLNEGSIMGMDVDMVNKLVSVNVNGVLHG 121
Query: 377 SFRAYDLMRKDRDGKGGTI 433
A M K G+GG+I
Sbjct: 122 IKHAAKAMIK--GGRGGSI 138
>At2g19550.1 68415.m02284 esterase/lipase/thioesterase family
protein low similarity to cinnamoyl ester hydrolase CinI
[Butyrivibrio fibrisolvens] GI:1622732; contains
esterase/lipase/thioesterase active site serine
(PS50187) (Interpro entry IPR000379) and alpha/beta
hydrolase fold (PF00561).
Length = 332
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 260 VIADCGYIDVVVNCAGIMNDRPNVYLKEIAVNVTALVTSSFR 385
++ + G +VVV C G +D+ N LK +A + SSFR
Sbjct: 19 LLHETGSKEVVVLCHGFRSDKTNKILKNVATALEKEKISSFR 60
>At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4)
identical to SUVH4 [Arabidopsis thaliana] GI:13517749;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH4 (SUVH4) GI:13517748
Length = 624
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 322 PIVHYTGTVNNNIDISTVSDNSGISGLQVTCR 227
P+ Y G V D+ T+SDN I ++ C+
Sbjct: 471 PVCEYIGVVRRTADVDTISDNEYI--FEIDCQ 500
>At3g15110.1 68416.m01911 expressed protein
Length = 266
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 310 YTGTVNNNIDISTVSDNSGISGLQVTCRYVAFVKCY 203
+T TV + ++ T+SDN + + VT R + CY
Sbjct: 172 FTVTVESGLNRQTISDNFSVRQITVTVRTIINGICY 207
>At5g18500.1 68418.m02183 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 484
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 182 DKYGSKRITFYKCDVTTSDLEAAYTAVIADCGYIDVVVNCAGIMNDRPNVY 334
DK+ SK F + +D T V+ GY+ +G++N++ +VY
Sbjct: 302 DKFNSKISDFGLAKLLGADKSFITTRVMGTFGYVAPEYANSGLLNEKSDVY 352
>At3g23860.1 68416.m02999 GTP-binding protein-related low similarity
to SP|Q99ME9 Nucleolar GTP-binding protein 1 (Chronic
renal failure gene protein) {Mus musculus}
Length = 230
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = +2
Query: 302 AGIMNDRPNVY-----LKEIAVNVTALVTSSFRAYDLMRKDRD 415
A +++ R N+Y +++++V T + SF DL+RKD D
Sbjct: 84 ASLLHQRYNMYHYDRAVRQVSVTQTLVNVMSFNYVDLLRKDDD 126
>At5g28850.2 68418.m03550 calcium-binding EF hand family protein
contains Pfam profile: PF00036 EF hand
Length = 536
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 137 DLDVNNGKALEKEMIDKYGSKRITFYKCDVTTSDLEAAYTA-VIADCGYIDVV 292
+LD ++ ++KE + +YG+ +T+ D S + +T+ V GY D V
Sbjct: 325 ELDTDHDFLIDKENLMRYGNHALTYRIVDRIFSQVARKFTSKVEGKMGYEDFV 377
>At5g28850.1 68418.m03549 calcium-binding EF hand family protein
contains Pfam profile: PF00036 EF hand
Length = 324
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 137 DLDVNNGKALEKEMIDKYGSKRITFYKCDVTTSDLEAAYTA-VIADCGYIDVV 292
+LD ++ ++KE + +YG+ +T+ D S + +T+ V GY D V
Sbjct: 113 ELDTDHDFLIDKENLMRYGNHALTYRIVDRIFSQVARKFTSKVEGKMGYEDFV 165
>At4g02630.1 68417.m00357 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 492
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 176 MIDK-YGSKRITFYKCDVTTSDLEAAYTAVIADCGYIDVVVNCAGIMNDRPNVY 334
++DK + SK F + S++ T V+ GY+ G++N+R +VY
Sbjct: 296 LLDKQWNSKVSDFGLAKLLGSEMSYVTTRVMGTFGYVAPEYASTGMLNERSDVY 349
>At3g23175.1 68416.m02922 lesion inducing protein-related similar to
ORF, able to induce HR-like lesions [Nicotiana tabacum];
contains Pfam profile PF05514: HR-like lesion-inducing
Length = 169
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +2
Query: 104 LQDGAKHV---AALDLDVNNGKALEKEMIDKYGSKRITFY 214
+QD A H A L+ G A+ M+ KYGSK +TFY
Sbjct: 40 IQDYADHYGGGAGGPLEKTMGPAVN--MLSKYGSKALTFY 77
>At3g43230.1 68416.m04563 zinc finger (FYVE type) family protein
contains Pfam domain PF01363: FYVE zinc finger
Length = 485
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 70 GRYWCRYSRGIFARRC 117
GR+ CR+ GIF R C
Sbjct: 194 GRHHCRFCGGIFCRNC 209
>At2g46840.1 68415.m05845 expressed protein ; expression supported
by MPSS
Length = 205
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 158 KALEKEMIDKYGSKRITFYKCDVTTSDLEAA 250
K +EKEM D Y + + +C + D E A
Sbjct: 174 KGMEKEMADDYSKLKKSLVRCKSSFEDKETA 204
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,245,160
Number of Sequences: 28952
Number of extensions: 153945
Number of successful extensions: 413
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -