Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J16
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    26   2.9  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   3.9  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   3.9  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    26   3.9  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   6.8  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   9.0  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   9.0  

>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 121 TLQHLGIFI-DESVIFNKLNISKLSYCKPNSTI 216
           TLQ   I   +ES +FN++ +S   YC  +ST+
Sbjct: 247 TLQQYSIVAQEESNLFNQIVLSNSKYCLAHSTL 279


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1

Query: 112  RPLTLQHLGIFIDESVIFNKLNISKL 189
            +P+TLQHL + I  S I N  N SKL
Sbjct: 1614 KPITLQHLSLII--SGILNYTNQSKL 1637


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 373 QLSTFMTSSFCQTSVNKYTFVYHQISSNS 459
           +L    +SSF Q S N Y+++Y  + S+S
Sbjct: 533 KLQGIFSSSFQQVSNNMYSWIYDHVFSSS 561


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 224 IQLCIILYKLNEVCRYEKIFGLNSILNKNYTYYINNS 334
           +  CI LYK  E C  +  FG+ + L  ++    N S
Sbjct: 325 VDRCIELYKYCEKCGIKSAFGIGTNLTSDFQKVSNPS 361


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 157  VIFNKLNISKLSYCKPNSTIKKNTTL 234
            ++ ++L I   SYC PN  I K T L
Sbjct: 1513 IVVSELLIIFKSYCMPNVAISKETLL 1538


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 299 GWNSNQIFFRICTLHLICIELYKVVFFFIVEFG 201
           G N   IF+   TL +IC   Y+V+   ++  G
Sbjct: 229 GENERYIFWDSSTLRIICSHTYQVLLKHLITKG 261


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 76  SRPEIPTKTPRGRPLTLQHLGIFIDESVIFNKLNISKLSYCKPNSTIKKNTTLYN 240
           S+PEIP + P  +PL  + L      S+  N+   S+L+     +    N+T Y+
Sbjct: 302 SKPEIPFRHPTSKPLPPKPLSRSKSSSLSRNQTR-SQLNDLSAENDSTSNSTEYD 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,103
Number of Sequences: 5004
Number of extensions: 38638
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)