Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J16
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0348 - 28162681-28162849,28162946-28163154                       29   2.2  
02_05_0563 + 29998291-29998753,29999256-29999468,29999550-299996...    27   6.8  

>02_05_0348 - 28162681-28162849,28162946-28163154
          Length = 125

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 480 HYFTGLYRVGRYLVVNKSIFVYASLTK**RHECR 379
           HY    +  GR L  NK IF+Y   T     ECR
Sbjct: 48  HYLDACFLCGRMLAGNKDIFMYRGDTPFCSEECR 81


>02_05_0563 +
           29998291-29998753,29999256-29999468,29999550-29999667,
           30000227-30000355,30000438-30000810,30000890-30001147,
           30001192-30001227
          Length = 529

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +2

Query: 260 VCRYEKIFGLNSILNKNYTYYINNSYSLIH*IFMKLIISYRHS*RHHFVKLA*TNILL-- 433
           +C  E    L+  LNK     + N +++   +   LI  +RH   H  VK    NILL  
Sbjct: 301 ICMKECARSLSEYLNKRQELGLQNEHNMFAQLIDSLIFMHRHGIVHRDVKPG--NILLEE 358

Query: 434 -FTTK 445
            FT K
Sbjct: 359 NFTVK 363


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,826,376
Number of Sequences: 37544
Number of extensions: 201823
Number of successful extensions: 414
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)