Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J16
         (520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47181| Best HMM Match : Pkinase (HMM E-Value=7.7e-31)               30   1.00 
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.00 
SB_4883| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.0  

>SB_47181| Best HMM Match : Pkinase (HMM E-Value=7.7e-31)
          Length = 801

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 52  QCGTHPGESRPEIPTKTPRGRPLTLQHLGIFIDE 153
           Q GT  G + PE+  K P GRP  +  LG+ + E
Sbjct: 704 QAGTR-GFAAPEVMEKEPHGRPADIHSLGVLLFE 736


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +1

Query: 40  RAPCQCGTHPGESRPEIPTKTPR 108
           R P    TH GE  P IPT TPR
Sbjct: 650 RVPYSRATHHGEPSPRIPTVTPR 672


>SB_4883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 179 IFNLLKITDSSIKIPRCCKVSGRPRGVLVGISGRLS-PG 66
           +   L I    IK+  CC  S     V+ G++G+ S PG
Sbjct: 70  VVRFLSINKELIKVKECCVASVAGEAVVAGVTGKASVPG 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,336,163
Number of Sequences: 59808
Number of extensions: 260495
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)