Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J16
         (520 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X51330-1|CAA35714.1|  536|Homo sapiens protein ( Human mRNA for ...    30   4.2  
BC068277-1|AAH68277.1|  607|Homo sapiens C2orf55 protein protein.      29   9.8  

>X51330-1|CAA35714.1|  536|Homo sapiens protein ( Human mRNA for
           transcription factor TFE3 (partial). ).
          Length = 536

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
 Frame = +1

Query: 46  PCQCGTH--PGESR--PEIPTKTPRGRP 117
           PC CGTH  PGE R   E+ T +PR  P
Sbjct: 461 PCPCGTHPCPGEGRRQDEVSTLSPRDCP 488


>BC068277-1|AAH68277.1|  607|Homo sapiens C2orf55 protein protein.
          Length = 607

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 43  APCQCGTHPGESRPEIPTKTPRGR 114
           A C+CG  PG +RP  P +  RGR
Sbjct: 508 AACRCGVSPGGARPRFPRR--RGR 529


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,159,673
Number of Sequences: 237096
Number of extensions: 1322439
Number of successful extensions: 2761
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2761
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)