Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J15
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    29   0.36 
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    27   1.9  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   2.5  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   3.3  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    26   3.3  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   4.4  
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe...    26   4.4  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   5.8  
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...    25   7.7  

>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 423 SLTYIVIFANN-NNHSCSMIYDGFTITNYINIFLSRVCNH 539
           SL Y+ ++A N N+HS   +++ F   +Y    +S   NH
Sbjct: 467 SLCYLCLYAQNLNSHSSQSLFELFQSASYPGFLISNDVNH 506


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 380 AHRSRLLSKLKYFTTIQLINQLKTISFSAS 291
           AHR  LLS  KY  T+ L+  L   S+ +S
Sbjct: 295 AHRKSLLSFSKYVDTMNLLRLLSEASYKSS 324


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -1

Query: 252 SLYYFSVCIIIMELYNVSGLLL 187
           S YY+++CI+I+ + ++ G L+
Sbjct: 349 SYYYYAICILIISVVSILGSLI 370


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 321 STKNYFFFCIPFITHVHHIKHIISLYYFSVCIIIMELYNV--SGLL 190
           ST N+F     FI H H +  I+ L + +  I+ + +  +  SGLL
Sbjct: 46  STDNHFTLIQTFIAHKHSVSSIVCLPFEADGIVDLSIITLDESGLL 91


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 489 FTITNYINIFLSRVCNHYYTILR 557
           F   N+INI LS +C H  TI++
Sbjct: 418 FGTINWINILLSYICYHRATIVQ 440


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 288 FITHVHHIKHIISLYYFSVCII 223
           F+ H+H I H+ SLY  S+C +
Sbjct: 36  FLVHIHLIPHLNSLY--SICFL 55


>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -2

Query: 527 SRKKNINVISYCKTIIYHRTRMIIIVSENDDVSKGRGGATAGV*FSLEAAHRSRL 363
           ++++ IN ++ C    +  T+ +IIV+EN     G+G    G  F   AA +S++
Sbjct: 109 TKEEGINNLAECINRAHEETKSVIIVTEN---MAGQGNCLGGT-FDDFAALKSKI 159


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +1

Query: 262 FYMMNVCNEWDAEKEIVFS*LINCIVVKYLSFESRRERCAASRLNYTPAVAPPRP 426
           F   N C   D +K  VFS +   I     +  + R   A  RL+ TP+  P  P
Sbjct: 371 FLSFNECASQD-KKNCVFSRVTKYIKAARRASTANRVSVAKDRLSLTPSSTPSTP 424


>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 7/19 (36%), Positives = 16/19 (84%)
 Frame = -2

Query: 551 YSIIMVTHSRKKNINVISY 495
           YS+++ T++ +KN+ +I+Y
Sbjct: 4   YSVLLPTYNERKNLPIITY 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,727
Number of Sequences: 5004
Number of extensions: 38828
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)