Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J15
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33370| Best HMM Match : Pentapeptide_2 (HMM E-Value=6)              32   0.28 
SB_23667| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_48878| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                29   2.0  
SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)                   29   3.5  

>SB_33370| Best HMM Match : Pentapeptide_2 (HMM E-Value=6)
          Length = 366

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +3

Query: 369 RAVRGFETELHPCRGTPASLTYIVIFANNNNHSCSMIYDGFTITNYINIFLSRVCNHYYT 548
           R   G++     C G   +   + ++ N     C+  YDG T    +N   +R+CN Y  
Sbjct: 131 RICNGYDGTTRICNGYDGTTRILNVY-NGTTRICNG-YDGTTRILNVNNGTTRICNGYDG 188

Query: 549 ILRVC 563
           I R+C
Sbjct: 189 ITRIC 193



 Score = 32.3 bits (70), Expect = 0.28
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +3

Query: 369 RAVRGFETELHPCRGTPASLTYIVIFANNNNHSCSMIYDGFTITNYINIFLSRVCNHYYT 548
           R   G++     C G   +   + ++ N     C+  YDG T    +N   +R+CN Y  
Sbjct: 221 RICNGYDGTTRICNGYDGTTRILNVY-NGTTRICNG-YDGTTRILNVNNGTTRICNGYDG 278

Query: 549 ILRVC 563
           I R+C
Sbjct: 279 ITRIC 283


>SB_23667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +3

Query: 369 RAVRGFETELHPCRGTPASLTYIVIFANNNNHSCSMIYDGFTITNYINIFLSRVCNHYYT 548
           R   G++     C G   +   + ++ +     C+  YDG T    +N   +R+CN Y  
Sbjct: 481 RICNGYDGTTRICNGYDGTTRILNVY-DGTTRICNG-YDGTTRILNVNNGTTRICNGYDG 538

Query: 549 ILRVC 563
           I R+C
Sbjct: 539 ITRIC 543


>SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 678

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 220 DNNTNGEVVKRDDVFYMMNVCNEWDAEKE 306
           ++NTN +V  R + F+M N  N+W+A KE
Sbjct: 157 NHNTNKKVANRIEKFFMRN--NDWEATKE 183


>SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 279 HVHHIKHIISLYYF-SVCIIIMELYNVSGLLLCASLFFMVLLKKL 148
           H HH +H  S     S+CIII+ + N+   LL +  F   +LK L
Sbjct: 325 HHHHYRHYASSSTLPSLCIIIIIITNIPYYLLFSRHFNFAILKNL 369


>SB_48878| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 1213

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -1

Query: 279 HVHHIKHIISLYYFSVCIIIMELYNVSGLLLCASLFFMVLLKK 151
           H HH+  II ++   VC+II+ +   +   L   +  ++++K+
Sbjct: 19  HHHHVHFIIYIFINDVCLIIIVIIATATFALIIVIIIIIVIKE 61


>SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
 Frame = -2

Query: 503 ISYCKTIIYHRTRMIIIVSENDDVSKGRGG-ATAGV*FSLEAAHRSRLLSKLKY--FTTI 333
           ++ C+    +      ++ E+ D   G    A  G  F  E  H  R L  + +  +TTI
Sbjct: 45  VTACEKFSNNNETAAKMIKESMDKKFGASWHAVVGEGFGFEITHEVRNLLYMFFGKYTTI 104

Query: 332 QLINQLKTISFSASHSLHTFII*NTSSLFTTSPFVLLSWNYTT 204
              N    + +  S  +H       SSL   +P ++L  N TT
Sbjct: 105 LDANSWNKVEYQNSKEMHLITSTLPSSLTPAAPILVLWENKTT 147


>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
          Length = 587

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -2

Query: 347 YFTTIQLINQLKTISFSASHSLHTFII*NTSSLFTTSPFVLLSWNYTT 204
           Y TTI + N   T++ + + +  T +    ++ +TT   + +S NYTT
Sbjct: 411 YTTTITINNYTTTVNTTITTNYTTIVTITITTNYTTIVTITISTNYTT 458


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,203,515
Number of Sequences: 59808
Number of extensions: 296620
Number of successful extensions: 780
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)