Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J15
         (564 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            26   0.74 
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    24   3.0  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   9.1  
AJ130951-1|CAA10260.1|  189|Anopheles gambiae SG3 protein protein.     23   9.1  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 26.2 bits (55), Expect = 0.74
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 315  KNYFFFCIPFITHVHHIKHIIS 250
            K YF F   FIT VH   H++S
Sbjct: 1749 KEYFAFYENFITQVHGTSHVMS 1770


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 414 TPASLTYIVIFANNNNHSCSMIYDGF 491
           TP S+TY    + N N  C++  D F
Sbjct: 483 TPKSITYKGATSANTNEMCNLFADRF 508


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 54  IRPKLSYAGIVW 19
           +RP L YA I+W
Sbjct: 825 VRPLLEYASIIW 836


>AJ130951-1|CAA10260.1|  189|Anopheles gambiae SG3 protein protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 407 PWHPRVPY 430
           PWHPR P+
Sbjct: 95  PWHPRPPF 102


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 548,854
Number of Sequences: 2352
Number of extensions: 9501
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52983882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)