Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J15
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46933-6|CAA87038.3|  321|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z46829-2|CAA86863.3|  321|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z99281-18|CAD56258.1|  380|Caenorhabditis elegans Hypothetical p...    28   4.0  
U00043-12|AAC77504.2|  613|Caenorhabditis elegans Hypothetical p...    28   4.0  
U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical p...    28   5.3  
U58752-3|AAB00666.1|  367|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U41104-6|AAK77633.2|  419|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z81506-10|CAB04123.2|  270|Caenorhabditis elegans Hypothetical p...    27   9.3  
U80839-2|AAW88386.1|  346|Caenorhabditis elegans Serpentine rece...    27   9.3  
U80839-1|AAB37913.3|  337|Caenorhabditis elegans Serpentine rece...    27   9.3  
AL023836-2|CAC42371.1|  270|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z46933-6|CAA87038.3|  321|Caenorhabditis elegans Hypothetical
           protein T14B1.2 protein.
          Length = 321

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = -2

Query: 365 LLSKLKYFTTIQLINQLKTISFSASHSLHTFII*NTSSLFTTSPFVLLS--WNYTTCRGY 192
           LLS + Y   I     L  + +  +H+L        S LF    F+  S  W + TC  Y
Sbjct: 172 LLSPIFYVVMILTSFSLSALIYCIAHNLTHMEERQRSKLFRRLFFLFSSTLWTFFTCLPY 231

Query: 191 YCVHHFSLWC 162
             ++ FS++C
Sbjct: 232 RLLYLFSIFC 241


>Z46829-2|CAA86863.3|  321|Caenorhabditis elegans Hypothetical
           protein T14B1.2 protein.
          Length = 321

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = -2

Query: 365 LLSKLKYFTTIQLINQLKTISFSASHSLHTFII*NTSSLFTTSPFVLLS--WNYTTCRGY 192
           LLS + Y   I     L  + +  +H+L        S LF    F+  S  W + TC  Y
Sbjct: 172 LLSPIFYVVMILTSFSLSALIYCIAHNLTHMEERQRSKLFRRLFFLFSSTLWTFFTCLPY 231

Query: 191 YCVHHFSLWC 162
             ++ FS++C
Sbjct: 232 RLLYLFSIFC 241


>Z99281-18|CAD56258.1|  380|Caenorhabditis elegans Hypothetical
           protein Y57G11C.36 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 217 HDNNTNGEVVKRDDVFYMMNV 279
           H NN +  + K DDVF+MM++
Sbjct: 282 HSNNNHSSMQKMDDVFHMMHM 302


>U00043-12|AAC77504.2|  613|Caenorhabditis elegans Hypothetical
           protein T26A5.1 protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -1

Query: 246 YYFSVCIIIMELYNVSGLLLCASLFFMV 163
           YYF+ CI ++ L++  GL+L   +++++
Sbjct: 434 YYFARCISLIPLFSTDGLILLFIVYWLI 461


>U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical
           protein K06C4.9 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 330 IN*STKNYFFFCIPFITHVHHIKHIISLYYFSVCIIIMELYN 205
           IN  +K Y  F  P I  +HHI +++ + Y +  + I  +++
Sbjct: 397 INMVSKTYAQFRFPVIRVIHHISNLLLVIYSASTVFIYLIFS 438


>U58752-3|AAB00666.1|  367|Caenorhabditis elegans Hypothetical
           protein B0218.5 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 368 ASGARLRD*TTPLPWHPRVPYL 433
           A+ ++++D T PL W P VPY+
Sbjct: 300 AAASKIKD-TDPLDWDPNVPYM 320


>U41104-6|AAK77633.2|  419|Caenorhabditis elegans Hypothetical
           protein T12C9.7 protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 274 NVCNEWDAEKEIVFS*LINCIVVKYLSFESRRERCAASRLNY 399
           NV +EWD E+E++ + +   +V    + +  RE C  SR NY
Sbjct: 360 NVKDEWDREREVMLTLIDLFLVAGDENHDIYREYC-TSRRNY 400


>Z81506-10|CAB04123.2|  270|Caenorhabditis elegans Hypothetical
           protein F16H6.10 protein.
          Length = 270

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 393 ELHPCRGTPASLTYIVIFANNNNHSCSMIYDGFTIT 500
           ELH   GT    TYI+ F++      S+I + F +T
Sbjct: 198 ELHDFYGTTKLFTYILAFSDEYPIDKSLIQESFEVT 233


>U80839-2|AAW88386.1|  346|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 20, isoform b protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 275 FII*NTSSLFTTSPFVLLSWNYTTCRGYYCVHHFSLW 165
           F++ +    F T   + +S+N  TC   + VHHF LW
Sbjct: 119 FLLNHYCLAFKTLSQIAISFNRMTCV-IFPVHHFKLW 154


>U80839-1|AAB37913.3|  337|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 20, isoform a protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 275 FII*NTSSLFTTSPFVLLSWNYTTCRGYYCVHHFSLW 165
           F++ +    F T   + +S+N  TC   + VHHF LW
Sbjct: 119 FLLNHYCLAFKTLSQIAISFNRMTCV-IFPVHHFKLW 154


>AL023836-2|CAC42371.1|  270|Caenorhabditis elegans Hypothetical
           protein F16H6.10 protein.
          Length = 270

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 393 ELHPCRGTPASLTYIVIFANNNNHSCSMIYDGFTIT 500
           ELH   GT    TYI+ F++      S+I + F +T
Sbjct: 198 ELHDFYGTTKLFTYILAFSDEYPIDKSLIQESFEVT 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,889,351
Number of Sequences: 27780
Number of extensions: 217751
Number of successful extensions: 656
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)