Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J15
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   0.92 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.8  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   4.9  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   6.5  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 450 NNNNHSCSMIYDGFTITNYINIFLSRVCNHYYTILRV 560
           NNNN+  +   + +   NY N + +     YY I+ +
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINI 361


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 551 YSIIMVTHSRKKNINV 504
           YS+ MV HS+   IN+
Sbjct: 483 YSLPMVNHSKSSRINI 498


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 196 VIIVCITFLYGVTEE 152
           ++IVC  F+Y VT E
Sbjct: 8   LLIVCALFIYTVTAE 22


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 196 VIIVCITFLYGVTEE 152
           ++IVC  F+Y VT E
Sbjct: 8   LLIVCALFIYTVTAE 22


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 415  VPRQGCSSVSKPRTARAYSRNLNT 344
            +P  G  S+    +   Y RN+NT
Sbjct: 1204 IPSAGDISIESKSSPLVYKRNINT 1227


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 72  LYTLPSIRPKLSYAGIVWYYRA 7
           LYT PSI   L Y    W  R+
Sbjct: 176 LYTTPSICTALGYLKDAWIGRS 197


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 72  LYTLPSIRPKLSYAGIVWYYRA 7
           LYT PSI   L Y    W  R+
Sbjct: 171 LYTTPSICTALGYLKDAWIGRS 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,192
Number of Sequences: 438
Number of extensions: 3388
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)