Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J14
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 226 1e-60
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 225 2e-60
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 131 6e-32
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 98 5e-22
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 31 0.12
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 27 1.1
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 1.1
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ... 27 1.4
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 2.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 2.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.3
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 25 4.4
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 25 5.8
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 7.7
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 7.7
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 7.7
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 226 bits (553), Expect = 1e-60
Identities = 98/144 (68%), Positives = 122/144 (84%)
Frame = +2
Query: 38 DDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYAR 217
D F+TFFSETG GK+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYAR
Sbjct: 46 DGGFSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYAR 105
Query: 218 GHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKS 397
GHYT+GKE+VD V D+IR++AD C+GLQGFL+FH LL+ERL+++Y KKS
Sbjct: 106 GHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKS 165
Query: 398 KLEFAIYPAPQVSTAVVEPYNSIL 469
KL+F++YPAPQVST+VVEPYNS+L
Sbjct: 166 KLQFSVYPAPQVSTSVVEPYNSVL 189
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 225 bits (551), Expect = 2e-60
Identities = 95/144 (65%), Positives = 122/144 (84%)
Frame = +2
Query: 38 DDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYAR 217
+D F TFFSETG GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYAR
Sbjct: 50 NDGFGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYAR 109
Query: 218 GHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKS 397
GHYT+GKE++D VL+RIR++AD C+GLQGFL+FH LL+ERL+++YGKKS
Sbjct: 110 GHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKS 169
Query: 398 KLEFAIYPAPQVSTAVVEPYNSIL 469
L+F++YPAPQVST+VVEPYNS+L
Sbjct: 170 NLQFSVYPAPQVSTSVVEPYNSVL 193
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 131 bits (316), Expect = 6e-32
Identities = 59/143 (41%), Positives = 86/143 (60%)
Frame = +2
Query: 41 DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARG 220
+ N +F+E GK+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+G
Sbjct: 45 ERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKG 104
Query: 221 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSK 400
HYT G E+ D VLD +R+ A+ C LQGF + H LL+ ++ +Y +
Sbjct: 105 HYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMM 164
Query: 401 LEFAIYPAPQVSTAVVEPYNSIL 469
F++ PAP+ S VVEPYN+ L
Sbjct: 165 ATFSVAPAPKSSDTVVEPYNATL 187
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 98.3 bits (234), Expect = 5e-22
Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Frame = +2
Query: 35 GDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANN 208
G D + FF ++ +++PRA+ +DLEP VV+ + + TY L++PE ++ K A NN
Sbjct: 44 GVDRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNN 103
Query: 209 YARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYG 388
+A G Y+ + I + ++D I + AD L+GF + H L+ERL+ Y
Sbjct: 104 WANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYP 162
Query: 389 KKSKLEFAIYPAPQ-VSTAVVEPYNSIL 469
KK ++++P Q VS VV+PYNS+L
Sbjct: 163 KKIIQTYSVFPNSQSVSDVVVQPYNSLL 190
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 30.7 bits (66), Expect = 0.12
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Frame = +3
Query: 3 TRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNN 176
T Q+T P+ V + TP T SS L S+ P+ SSSILN +T S++ ++ + ++
Sbjct: 368 TSTQITSPTAVNSSTPITSSSV---LNSSTPITSSSILNTSTPITSSSVLNSSTPITSSS 424
Query: 177 -LSLVRRMPQTTMLVVTTPL 233
L+ + +T+L +TP+
Sbjct: 425 ILNSSTPITSSTVLNSSTPI 444
Score = 28.3 bits (60), Expect = 0.62
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 218
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 1269 STPITSSTA---LNTSIPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTV 1325
Query: 219 VTT 227
V T
Sbjct: 1326 VNT 1328
Score = 27.5 bits (58), Expect = 1.1
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 218
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 501 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTV 557
Query: 219 VTT 227
V T
Sbjct: 558 VNT 560
Score = 27.5 bits (58), Expect = 1.1
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 218
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 2613 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTV 2669
Query: 219 VTT 227
V T
Sbjct: 2670 VNT 2672
Score = 27.5 bits (58), Expect = 1.1
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 218
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 2841 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTV 2897
Query: 219 VTT 227
V T
Sbjct: 2898 VNT 2900
Score = 27.5 bits (58), Expect = 1.1
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 218
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 2937 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTV 2993
Query: 219 VTT 227
V T
Sbjct: 2994 VNT 2996
Score = 27.1 bits (57), Expect = 1.4
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 218
+TP T SS L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 993 STPITSSSV---LNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTV 1049
Query: 219 VTT 227
V T
Sbjct: 1050 VNT 1052
Score = 26.6 bits (56), Expect = 1.9
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 218
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 1773 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 1829
Query: 219 VTT 227
V T
Sbjct: 1830 VNT 1832
Score = 25.8 bits (54), Expect = 3.3
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 218
+TP T S+A L ++ P+ SSS+LN S+ S I ++ +L P T+ V
Sbjct: 3381 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSSTV 3437
Query: 219 V--TTPL 233
V +TP+
Sbjct: 3438 VNSSTPI 3444
Score = 25.4 bits (53), Expect = 4.4
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 218
+TP T SS L S+ P+ SSSILN S+ S I ++ +L P T+ V
Sbjct: 405 STPITSSSV---LNSSTPITSSSILNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSV 461
Query: 219 V--TTPL 233
+ +TP+
Sbjct: 462 LNSSTPI 468
Score = 25.4 bits (53), Expect = 4.4
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQT--TM 212
+TP T SS L S+ P+ SSS+LN S+ A S I ++ L P T T
Sbjct: 633 STPITSSSV---LNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTA 689
Query: 213 LVVTTPL 233
L +TP+
Sbjct: 690 LNTSTPI 696
Score = 25.4 bits (53), Expect = 4.4
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQT--TM 212
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T T
Sbjct: 681 STPITSSTA---LNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTA 737
Query: 213 LVVTTPL 233
L +TP+
Sbjct: 738 LNTSTPI 744
Score = 25.4 bits (53), Expect = 4.4
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 218
+TP T SS L S+ P+ SSS+LN S+ S I ++ +L P T+ V
Sbjct: 981 STPITSSSV---LNSSTPITSSSVLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSV 1037
Query: 219 V--TTPL 233
+ +TP+
Sbjct: 1038 LNSSTPI 1044
Score = 25.4 bits (53), Expect = 4.4
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 218
+TP T S+A L ++ P+ SSS+LN S+ S I ++ L P T+ V
Sbjct: 1065 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTV 1121
Query: 219 VTT 227
V T
Sbjct: 1122 VNT 1124
Score = 25.4 bits (53), Expect = 4.4
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 218
+TP T SS L S+ P+ SSS+LN S+ S I ++ +L +P T+ V
Sbjct: 1233 STPITSSSI---LNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSTALNTSIPITSSSV 1289
Query: 219 V--TTPL 233
+ +TP+
Sbjct: 1290 LNSSTPI 1296
Score = 25.4 bits (53), Expect = 4.4
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 218
+TP T S+A L ++ P+ SSS+LN S+ S I ++ +L P T+ V
Sbjct: 1605 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTV 1661
Query: 219 V--TTPL 233
V +TP+
Sbjct: 1662 VNSSTPI 1668
Score = 25.4 bits (53), Expect = 4.4
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTML 215
+TP T S+A L ++ P+ SSS+LN +T S++ +T S I ++ L P T+
Sbjct: 1965 STPITSSTA---LNTSTPITSSSVLNSSTPITSSSVLNT-STPITSSSVLNSSTPITSST 2020
Query: 216 VVTT 227
VV T
Sbjct: 2021 VVNT 2024
Score = 25.4 bits (53), Expect = 4.4
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTML 215
+TP T S+A L ++ P+ SSS+LN +T S + +T S I ++ L P T+
Sbjct: 2301 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVVNT-STPITSSSVLNSSTPITSST 2356
Query: 216 VVTT 227
VV T
Sbjct: 2357 VVNT 2360
Score = 25.4 bits (53), Expect = 4.4
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTML 215
+TP T S+A L ++ P+ SSS+LN +T S + +T S I ++ L P T+
Sbjct: 2709 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVVNT-STPITSSSVLNSSTPITSST 2764
Query: 216 VVTT 227
VV T
Sbjct: 2765 VVNT 2768
Score = 25.0 bits (52), Expect = 5.8
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 218
+TP T S+ + S+ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 837 STPITSSTV---VNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 893
Query: 219 VTT 227
V T
Sbjct: 894 VNT 896
Score = 25.0 bits (52), Expect = 5.8
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +3
Query: 3 TRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNL 179
T +T S V + TP T S+A L ++ P+ SSS+LN S+ A S I ++
Sbjct: 1568 TSTPITSSSVVNSSTPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSS 1624
Query: 180 SLVRRMPQT--TMLVVTTPL 233
L P T T+L +TP+
Sbjct: 1625 VLNSSTPITSSTVLNSSTPI 1644
Score = 25.0 bits (52), Expect = 5.8
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 218
+TP T S+ + S+ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 2445 STPITSSTV---VNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 2501
Query: 219 VTT 227
V T
Sbjct: 2502 VNT 2504
Score = 24.6 bits (51), Expect = 7.7
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 218
+TP T S+A L ++ P+ SSS+LN S+ S I ++ L P T+ V
Sbjct: 729 STPITSSTA---LNTSTPITSSSVLNSSTPITSSSILNSSTPITSSSVLNSSTPITSSTV 785
Query: 219 VTT 227
V T
Sbjct: 786 VNT 788
Score = 24.6 bits (51), Expect = 7.7
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTML 215
+TP T S+A L ++ P+ SSS+LN +T S + +T S I ++ + P T+
Sbjct: 1125 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVVNT-STPITSSTVVNSSTPITSST 1180
Query: 216 VVTT 227
VV T
Sbjct: 1181 VVNT 1184
Score = 24.6 bits (51), Expect = 7.7
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNN-LSLVRRMPQTTM 212
+TP T SS L S+ P+ SSS+LN +T S + +T + ++ ++ + +T
Sbjct: 1533 STPITSSSV---LNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVVNSSTPITSSTA 1589
Query: 213 LVVTTPL 233
L +TP+
Sbjct: 1590 LNTSTPI 1596
Score = 24.6 bits (51), Expect = 7.7
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQT--TM 212
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T T
Sbjct: 1749 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTA 1805
Query: 213 LVVTTPL 233
L +TP+
Sbjct: 1806 LNTSTPI 1812
Score = 24.6 bits (51), Expect = 7.7
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQT--TM 212
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T T+
Sbjct: 1845 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 1901
Query: 213 LVVTTPL 233
L +TP+
Sbjct: 1902 LNSSTPI 1908
Score = 24.6 bits (51), Expect = 7.7
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQT--TM 212
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T T+
Sbjct: 2037 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 2093
Query: 213 LVVTTPL 233
L +TP+
Sbjct: 2094 LNSSTPI 2100
Score = 24.6 bits (51), Expect = 7.7
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 39 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 218
+TP T S+A L ++ P+ SSS+LN S+ S I ++ + P T+ V
Sbjct: 2157 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVVNSSTPITSSTVVNTSTPITSSTV 2213
Query: 219 VTT 227
V T
Sbjct: 2214 VNT 2216
Score = 24.6 bits (51), Expect = 7.7
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 48 STRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVT 224
ST ++ L S+ P+ SSS+LN +T S + +T S I ++ L P T+ VV
Sbjct: 3225 STAITSSSVLNSSTPITSSSVLNSSTPITSSTVVNT-STPITSSSVLNSSTPITSSTVVN 3283
Query: 225 T 227
T
Sbjct: 3284 T 3284
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 27.5 bits (58), Expect = 1.1
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = -2
Query: 364 HEERSETRTGATTERVEDEESLEACALVSEFADAVEDQVYDFLSNGVVTTSIVVCGILLT 185
HE+ + +TG ++ +++E ++A D E+QV + S G + VV LL
Sbjct: 108 HEKPARPQTGEGSDNEDEDEDIDALIEDLYSQDQEEEQVEEEESPGPAGAAKVVPEELLE 167
Query: 184 SDKLFWMKQLSV 149
+D + + + V
Sbjct: 168 TDPKYGLTESEV 179
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 12 QLTRPSGVETTPSTRSSARPELASTFPVPSSS 107
Q +PSGVE T ++R++A+ + ST + S +
Sbjct: 42 QAVKPSGVEPTNTSRANAQKKTESTGKITSEA 73
>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 1.4
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 72 ELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVV 221
E+ F VP +S LNP S +TD +++ N+ + R+ T +++
Sbjct: 218 EVKDLFYVPLTSFLNPKHQKISRFRNTDLLYVEFNIDKIPRIWGITAVIL 267
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 24 PSGVETTPSTRSSARPELASTFPV 95
P+ VETTPST +SA + + F +
Sbjct: 350 PANVETTPSTATSAPKKSTAPFAI 373
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.2 bits (55), Expect = 2.5
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -2
Query: 469 KDRVVGLYNSSGHLGCGIDSELQFRLLAVVNGESLHEERSETRTGATTERVEDEESL-EA 293
KD++ L N + HLG + S Q + E + + +++ RV++E + E
Sbjct: 146 KDQIEALQNENSHLGEQVQSAHQAL-------SDIEERKKQHMFASSSSRVKEEILVQEK 198
Query: 292 CALVSEFADAVED 254
ALVS+ A D
Sbjct: 199 SALVSDLASLQSD 211
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 3.3
Identities = 24/133 (18%), Positives = 45/133 (33%)
Frame = +3
Query: 18 TRPSGVETTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRM 197
++PS T+ ST SSA P S+ + SSS+++ + S + + S ++LS +
Sbjct: 185 SQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSS---SSSPSSSSSSTLTSSSLS-TSSI 240
Query: 198 PQTTMLVVTTPLERKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 377
P T+ +T
Sbjct: 241 PSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSP 300
Query: 378 XTTARSLNWSSLS 416
+T+ +++ SS S
Sbjct: 301 TSTSSTISSSSSS 313
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 4.4
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -2
Query: 268 DAVEDQVYDFLSNGVVT-TSIVVC 200
DA DQ+ +++ NG++T T IV C
Sbjct: 68 DATIDQLQNYMENGILTSTDIVHC 91
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 5.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 132 RSALAHTDSCFIQNNLSLVRRMPQT 206
+S + HT++ NN SL+RR+ T
Sbjct: 605 KSLIQHTNNLLQSNNASLLRRLAAT 629
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 7.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 188 KEDAANNYARGHYTIGKEIVDLV 256
+E ANN+ RGH I K+ D +
Sbjct: 599 RERKANNFFRGHIEIDKKTKDFL 621
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 24.6 bits (51), Expect = 7.7
Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 367 LHEERSETRTGATTERVEDEESLEACALVSEFADAVEDQVYDFLS-NGVV 221
LH + + + ++ ED+ +C ++S AD + + L+ NG++
Sbjct: 1078 LHSQPIQNVSDVNNKKDEDDHEQTSCLIISGIADVFSENMSLLLNVNGIL 1127
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 24.6 bits (51), Expect = 7.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 388 AVVNGESLHEERSETRTGATTERVEDEESLE 296
AVVNG S H + + + + ESLE
Sbjct: 662 AVVNGNSQHHHNRDDASSGLSSNGSENESLE 692
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,927
Number of Sequences: 5004
Number of extensions: 40715
Number of successful extensions: 221
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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